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BioLiP
Download all results in tab-seperated text for 21 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 7boh:B (2.82) BS01 rna ? GO:0000028 ... P0A7V0 34088665
    2 7boh:B (2.82) BS02 ZN ? GO:0000028 ... P0A7V0 34088665
    3 7boh:C (2.82) BS01 rna ? GO:0000028 ... P0A7V3 34088665
    4 7boh:D (2.82) BS01 rna ? GO:0000028 ... P0A7V8 34088665
    5 7boh:E (2.82) BS01 rna ? GO:0000028 ... P0A7W1 34088665
    6 7boh:F (2.82) BS01 rna ? GO:0002181 ... P02358 34088665
    7 7boh:G (2.82) BS01 rna ? GO:0000028 ... P02359 34088665
    8 7boh:H (2.82) BS01 rna ? GO:0000028 ... P0A7W7 34088665
    9 7boh:I (2.82) BS01 rna ? GO:0000049 ... P0A7X3 34088665
    10 7boh:J (2.82) BS01 rna ? GO:0000049 ... P0A7R5 34088665
    11 7boh:K (2.82) BS01 rna ? GO:0002181 ... P0A7R9 34088665
    12 7boh:L (2.82) BS01 rna ? GO:0000049 ... P0A7S3 34088665
    13 7boh:M (2.82) BS01 rna ? GO:0000049 ... P0A7S9 34088665
    14 7boh:N (2.82) BS01 rna ? GO:0000028 ... P0AG59 34088665
    15 7boh:O (2.82) BS01 rna ? GO:0000028 ... P0ADZ4 34088665
    16 7boh:P (2.82) BS01 rna ? GO:0000028 ... P0A7T3 34088665
    17 7boh:Q (2.82) BS01 rna ? GO:0000028 ... P0AG63 34088665
    18 7boh:R (2.82) BS01 rna ? GO:0002181 ... P0A7T7 34088665
    19 7boh:S (2.82) BS01 rna ? GO:0000028 ... P0A7U3 34088665
    20 7boh:T (2.82) BS01 rna ? GO:0000028 ... P0A7U7 34088665
    21 7boh:V (2.82) BS01 rna ? GO:0005737 ... P0A7G2 34088665
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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