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BioLiP
Download all results in tab-seperated text for 37 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 7as8:0 (2.9) BS01 rna ? GO:0000049 ... O34693 33259810
    2 7as8:0 (2.9) BS02 rna ? GO:0000049 ... O34693 33259810
    3 7as8:1 (2.9) BS01 rna ? GO:0003723 ... P37557 33259810
    4 7as8:1 (2.9) BS02 rna ? GO:0003723 ... P37557 33259810
    5 7as8:E (2.9) BS01 rna ? GO:0002181 ... P42919 33259810
    6 7as8:F (2.9) BS01 rna ? GO:0003735 ... P42920 33259810
    7 7as8:G (2.9) BS01 rna ? GO:0003735 ... P42921 33259810
    8 7as8:H (2.9) BS01 rna ? GO:0000049 ... P12877 33259810
    9 7as8:H (2.9) BS02 rna ? GO:0000049 ... P12877 33259810
    10 7as8:H (2.9) BS03 rna ? GO:0000049 ... P12877 33259810
    11 7as8:I (2.9) BS01 rna ? GO:0002181 ... P46898 33259810
    12 7as8:K (2.9) BS01 rna ? GO:0003735 ... Q06796 33259810
    13 7as8:L (2.9) BS01 rna ? GO:0003735 ... P42923 33259810
    14 7as8:N (2.9) BS01 rna ? GO:0003729 ... P70974 33259810
    15 7as8:O (2.9) BS01 rna ? GO:0003735 ... P12875 33259810
    16 7as8:P (2.9) BS01 rna ? GO:0003735 ... P19946 33259810
    17 7as8:Q (2.9) BS01 rna ? GO:0000049 ... P14577 33259810
    18 7as8:Q (2.9) BS02 rna ? GO:0000049 ... P14577 33259810
    19 7as8:R (2.9) BS01 rna ? GO:0003735 ... P20277 33259810
    20 7as8:S (2.9) BS01 rna ? GO:0003735 ... P46899 33259810
    21 7as8:S (2.9) BS02 rna ? GO:0003735 ... P46899 33259810
    22 7as8:T (2.9) BS01 rna ? GO:0003735 ... O31742 33259810
    23 7as8:U (2.9) BS01 rna ? GO:0000027 ... P55873 33259810
    24 7as8:V (2.9) BS01 rna ? GO:0003723 ... P26908 33259810
    25 7as8:W (2.9) BS01 rna ? GO:0003735 ... P42060 33259810
    26 7as8:X (2.9) BS01 rna ? GO:0000027 ... P42924 33259810
    27 7as8:Y (2.9) BS01 rna ? GO:0003677 ... P0CI78 33259810
    28 7as8:a (2.9) BS01 rna ? GO:0003735 ... P05657 33259810
    29 7as8:a (2.9) BS02 rna ? GO:0003735 ... P05657 33259810
    30 7as8:b (2.9) BS01 rna ? GO:0003735 ... P37807 33259810
    31 7as8:c (2.9) BS01 rna ? GO:0003735 ... P12873 33259810
    32 7as8:d (2.9) BS01 rna ? GO:0003735 ... P19947 33259810
    33 7as8:f (2.9) BS01 rna ? GO:0003735 ... O34687 33259810
    34 7as8:g (2.9) BS01 rna ? GO:0003735 ... P56849 33259810
    35 7as8:h (2.9) BS01 rna ? GO:0003735 ... P05647 33259810
    36 7as8:i (2.9) BS01 rna ? GO:0003735 ... P55874 33259810
    37 7as8:j (2.9) BS01 rna ? GO:0003735 ... P20278 33259810
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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