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BioLiP
Download all results in tab-seperated text for 76 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 6zu1:AB (3.0) BS01 rna ? GO:0000028 ... P0A7V0 32820062
    2 6zu1:AC (3.0) BS01 rna ? GO:0000028 ... P0A7V3 32820062
    3 6zu1:AD (3.0) BS01 rna ? GO:0000028 ... P0A7V8 32820062
    4 6zu1:AE (3.0) BS01 rna ? GO:0000028 ... P0A7W1 32820062
    5 6zu1:AE (3.0) BS02 rna ? GO:0000028 ... P0A7W1 32820062
    6 6zu1:AF (3.0) BS01 rna ? GO:0002181 ... P02358 32820062
    7 6zu1:AG (3.0) BS01 rna ? GO:0003723 ... P02359 32820062
    8 6zu1:AH (3.0) BS01 rna ? GO:0000028 ... P0A7W7 32820062
    9 6zu1:AI (3.0) BS01 rna ? GO:0000049 ... P0A7X3 32820062
    10 6zu1:AI (3.0) BS02 rna ? GO:0000049 ... P0A7X3 32820062
    11 6zu1:AI (3.0) BS03 MG ? GO:0000049 ... P0A7X3 32820062
    12 6zu1:AJ (3.0) BS01 rna ? GO:0000049 ... P0A7R5 32820062
    13 6zu1:AK (3.0) BS01 rna ? GO:0002181 ... P0A7R9 32820062
    14 6zu1:AL (3.0) BS01 rna ? GO:0000049 ... P0A7S3 32820062
    15 6zu1:AL (3.0) BS02 MG ? GO:0000049 ... P0A7S3 32820062
    16 6zu1:AM (3.0) BS01 rna ? GO:0000049 ... P0A7S9 32820062
    17 6zu1:AM (3.0) BS02 rna ? GO:0000049 ... P0A7S9 32820062
    18 6zu1:AM (3.0) BS03 MG ? GO:0000049 ... P0A7S9 32820062
    19 6zu1:AN (3.0) BS01 rna ? GO:0000028 ... P0AG59 32820062
    20 6zu1:AO (3.0) BS01 rna ? GO:0000028 ... P0ADZ4 32820062
    21 6zu1:AO (3.0) BS02 rna ? GO:0000028 ... P0ADZ4 32820062
    22 6zu1:AP (3.0) BS01 rna ? GO:0000028 ... P0A7T3 32820062
    23 6zu1:AQ (3.0) BS01 rna ? GO:0000028 ... P0AG63 32820062
    24 6zu1:AR (3.0) BS01 rna ? GO:0002181 ... P0A7T7 32820062
    25 6zu1:AS (3.0) BS01 rna ? GO:0000028 ... P0A7U3 32820062
    26 6zu1:AT (3.0) BS01 rna ? GO:0000028 ... P0A7U7 32820062
    27 6zu1:AU (3.0) BS01 rna ? GO:0000028 ... P68679 32820062
    28 6zu1:B1 (3.0) BS01 rna ? GO:0000027 ... P0AG51 32820062
    29 6zu1:B1 (3.0) BS02 rna ? GO:0000027 ... P0AG51 32820062
    30 6zu1:B2 (3.0) BS01 rna ? GO:0000027 ... P0A7N4 32820062
    31 6zu1:B3 (3.0) BS01 rna ? GO:0000027 ... P0A7N9 32820062
    32 6zu1:B4 (3.0) BS01 rna ? GO:0002181 ... P0A7P5 32820062
    33 6zu1:B5 (3.0) BS01 rna ? GO:0002181 ... P0A7Q1 32820062
    34 6zu1:B6 (3.0) BS01 rna ? GO:0002181 ... P0A7Q6 32820062
    35 6zu1:B6 (3.0) BS02 ZN ? GO:0002181 ... P0A7Q6 32820062
    36 6zu1:B7 (3.0) BS01 rna ? GO:0002181 ... P0A7M9 32820062
    37 6zu1:B7 (3.0) BS02 rna ? GO:0002181 ... P0A7M9 32820062
    38 6zu1:B7 (3.0) BS03 ZN ? GO:0002181 ... P0A7M9 32820062
    39 6zu1:BC (3.0) BS01 rna ? GO:0000027 ... P60422 32820062
    40 6zu1:BC (3.0) BS02 MG ? GO:0000027 ... P60422 32820062
    41 6zu1:BD (3.0) BS01 rna ? GO:0000027 ... P60438 32820062
    42 6zu1:BE (3.0) BS01 rna ? GO:0001070 ... P60723 32820062
    43 6zu1:BF (3.0) BS01 rna ? GO:0000027 ... P62399 32820062
    44 6zu1:BF (3.0) BS02 rna ? GO:0000027 ... P62399 32820062
    45 6zu1:BF (3.0) BS03 rna ? GO:0000027 ... P62399 32820062
    46 6zu1:BG (3.0) BS01 rna ? GO:0000027 ... P0AG55 32820062
    47 6zu1:BH (3.0) BS01 rna ? GO:0002181 ... P0A7R1 32820062
    48 6zu1:BK (3.0) BS01 rna ? GO:0002181 ... P0AA10 32820062
    49 6zu1:BL (3.0) BS01 rna ? GO:0002181 ... P0ADY3 32820062
    50 6zu1:BL (3.0) BS02 rna ? GO:0002181 ... P0ADY3 32820062
    51 6zu1:BM (3.0) BS01 rna ? GO:0002181 ... P02413 32820062
    52 6zu1:BN (3.0) BS01 rna ? GO:0000027 ... P0ADY7 32820062
    53 6zu1:BN (3.0) BS02 rna ? GO:0000027 ... P0ADY7 32820062
    54 6zu1:BO (3.0) BS01 rna ? GO:0000027 ... P0AG44 32820062
    55 6zu1:BP (3.0) BS01 rna ? GO:0002181 ... P0C018 32820062
    56 6zu1:BP (3.0) BS02 rna ? GO:0002181 ... P0C018 32820062
    57 6zu1:BQ (3.0) BS01 rna ? GO:0000027 ... P0A7K6 32820062
    58 6zu1:BQ (3.0) BS02 rna ? GO:0000027 ... P0A7K6 32820062
    59 6zu1:BR (3.0) BS01 rna ? GO:0000027 ... P0A7L3 32820062
    60 6zu1:BS (3.0) BS01 rna ? GO:0002181 ... P0AG48 32820062
    61 6zu1:BT (3.0) BS01 rna ? GO:0002181 ... P61175 32820062
    62 6zu1:BU (3.0) BS01 rna ? GO:0000027 ... P0ADZ0 32820062
    63 6zu1:BV (3.0) BS01 rna ? GO:0000027 ... P60624 32820062
    64 6zu1:BW (3.0) BS01 rna ? GO:0000027 ... P68919 32820062
    65 6zu1:BW (3.0) BS02 rna ? GO:0000027 ... P68919 32820062
    66 6zu1:BX (3.0) BS01 rna ? GO:0000027 ... P0A7L8 32820062
    67 6zu1:BX (3.0) BS02 rna ? GO:0000027 ... P0A7L8 32820062
    68 6zu1:BY (3.0) BS01 rna ? GO:0000027 ... P0A7M2 32820062
    69 6zu1:BZ (3.0) BS01 rna ? GO:0000027 ... P0A7M6 32820062
    70 6zu1:CC (3.0) BS01 rna 2.7.7.6 GO:0000345 ... P0A8V2 32820062
    71 6zu1:CC (3.0) BS02 dna 2.7.7.6 GO:0000345 ... P0A8V2 32820062
    72 6zu1:CC (3.0) BS03 dna 2.7.7.6 GO:0000345 ... P0A8V2 32820062
    73 6zu1:CD (3.0) BS01 dna 2.7.7.6 GO:0000287 ... P0A8T7 32820062
    74 6zu1:CD (3.0) BS02 MG 2.7.7.6 GO:0000287 ... P0A8T7 32820062
    75 6zu1:CD (3.0) BS03 ZN 2.7.7.6 GO:0000287 ... P0A8T7 32820062
    76 6zu1:CD (3.0) BS04 ZN 2.7.7.6 GO:0000287 ... P0A8T7 32820062
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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