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BioLiP
Download all results in tab-seperated text for 47 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 6zqe:CE (7.1) BS01 rna ? GO:0000447 ... Q12499 32943521
    2 6zqe:CE (7.1) BS02 rna ? GO:0000447 ... Q12499 32943521
    3 6zqe:CF (7.1) BS01 rna ? GO:0000245 ... P39990 32943521
    4 6zqe:CG (7.1) BS01 rna ? GO:0000245 ... P39990 32943521
    5 6zqe:CH (7.1) BS01 rna ? GO:0000447 ... Q06506 32943521
    6 6zqe:CH (7.1) BS02 rna ? GO:0000447 ... Q06506 32943521
    7 6zqe:CJ (7.1) BS01 rna ? GO:0005515 ... P53941 32943521
    8 6zqe:CK (7.1) BS01 rna ? GO:0000447 ... P47083 32943521
    9 6zqe:CL (7.1) BS01 rna ? GO:0000462 ... Q08965 32943521
    10 6zqe:CM (7.1) BS01 rna ? GO:0000447 ... Q08096 32943521
    11 6zqe:CN (7.1) BS01 rna ? GO:0000028 ... P25368 32943521
    12 6zqe:DA (7.1) BS01 rna ? GO:0000462 ... P33442 32943521
    13 6zqe:DE (7.1) BS01 rna ? GO:0002181 ... P0CX35 32943521
    14 6zqe:DF (7.1) BS01 rna ? GO:0000028 ... P26783 32943521
    15 6zqe:DG (7.1) BS01 rna ? GO:0000462 ... P0CX37 32943521
    16 6zqe:DH (7.1) BS01 rna ? GO:0002181 ... P26786 32943521
    17 6zqe:DI (7.1) BS01 rna ? GO:0000462 ... P0CX39 32943521
    18 6zqe:DJ (7.1) BS01 rna ? GO:0000462 ... O13516 32943521
    19 6zqe:DL (7.1) BS01 rna ? GO:0000028 ... P0CX47 32943521
    20 6zqe:DN (7.1) BS01 rna ? GO:0000462 ... P05756 32943521
    21 6zqe:DO (7.1) BS01 rna ? GO:0000028 ... P06367 32943521
    22 6zqe:DQ (7.1) BS01 rna ? GO:0000462 ... P0CX51 32943521
    23 6zqe:DS (7.1) BS01 rna ? GO:0000054 ... P0CX55 32943521
    24 6zqe:DT (7.1) BS01 rna ? GO:0000028 ... P07280 32943521
    25 6zqe:DW (7.1) BS01 rna ? GO:0002181 ... P0C0W1 32943521
    26 6zqe:DX (7.1) BS01 rna ? GO:0000462 ... P0CX29 32943521
    27 6zqe:DY (7.1) BS01 rna ? GO:0000462 ... P0CX31 32943521
    28 6zqe:Db (7.1) BS01 rna ? GO:0000028 ... P35997 32943521
    29 6zqe:Db (7.1) BS02 ZN ? GO:0000028 ... P35997 32943521
    30 6zqe:Dc (7.1) BS01 rna ? GO:0000028 ... Q3E7X9 32943521
    31 6zqe:JD (7.1) BS01 rna 3.6.4.13 GO:0000462 ... Q04217 32943521
    32 6zqe:JG (7.1) BS01 rna 2.1.1.260 GO:0000447 ... Q06287 32943521
    33 6zqe:JJ (7.1) BS01 peptide ? GO:0000056 ... Q99216 32943521
    34 6zqe:JJ (7.1) BS02 rna ? GO:0000056 ... Q99216 32943521
    35 6zqe:JL (7.1) BS01 rna 2.1.1.183 GO:0000154 ... P41819 32943521
    36 6zqe:JM (7.1) BS01 rna ? GO:0000447 ... Q12035 32943521
    37 6zqe:JM (7.1) BS02 rna ? GO:0000447 ... Q12035 32943521
    38 6zqe:UA (7.1) BS01 rna ? GO:0000028 ... P25635 32943521
    39 6zqe:UC (7.1) BS01 rna ? GO:0000447 ... Q12136 32943521
    40 6zqe:UC (7.1) BS02 rna ? GO:0000447 ... Q12136 32943521
    41 6zqe:UK (7.1) BS01 rna ? GO:0000447 ... P34247 32943521
    42 6zqe:UK (7.1) BS02 rna ? GO:0000447 ... P34247 32943521
    43 6zqe:UL (7.1) BS01 rna ? GO:0000447 ... Q12220 32943521
    44 6zqe:UQ (7.1) BS01 rna ? GO:0000462 ... Q02931 32943521
    45 6zqe:UT (7.1) BS01 rna ? GO:0000447 ... P35194 32943521
    46 6zqe:UV (7.1) BS01 rna ? GO:0000028 ... P53254 32943521
    47 6zqe:UX (7.1) BS01 rna ? GO:0000447 ... Q05498 32943521
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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