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BioLiP
Download all results in tab-seperated text for 93 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 6zm6:0 (2.59) BS01 rna ? GO:0003723 ... Q9BYC8 33602856
    2 6zm6:0 (2.59) BS02 ZN ? GO:0003723 ... Q9BYC8 33602856
    3 6zm6:1 (2.59) BS01 rna ? GO:0003735 ... O75394 33602856
    4 6zm6:2 (2.59) BS01 rna ? GO:0003735 ... Q9BQ48 33602856
    5 6zm6:3 (2.59) BS01 rna ? GO:0003735 ... Q9NZE8 33602856
    6 6zm6:4 (2.59) BS01 rna ? GO:0003735 ... Q9P0J6 33602856
    7 6zm6:4 (2.59) BS02 ZN ? GO:0003735 ... Q9P0J6 33602856
    8 6zm6:5 (2.59) BS01 rna ? GO:0003723 ... Q9BZE1 33602856
    9 6zm6:6 (2.59) BS01 rna ? GO:0005515 ... Q96DV4 33602856
    10 6zm6:6 (2.59) BS02 rna ? GO:0005515 ... Q96DV4 33602856
    11 6zm6:8 (2.59) BS01 rna ? GO:0003723 ... Q9NQ50 33602856
    12 6zm6:8 (2.59) BS02 rna ? GO:0003723 ... Q9NQ50 33602856
    13 6zm6:8 (2.59) BS03 rna ? GO:0003723 ... Q9NQ50 33602856
    14 6zm6:8 (2.59) BS04 rna ? GO:0003723 ... Q9NQ50 33602856
    15 6zm6:9 (2.59) BS01 rna ? GO:0003723 ... Q8IXM3 33602856
    16 6zm6:A0 (2.59) BS01 rna ? GO:0003735 ... P82930 33602856
    17 6zm6:A2 (2.59) BS01 rna ? GO:0001650 ... Q96BP2 33602856
    18 6zm6:A3 (2.59) BS01 rna ? GO:0005515 ... Q9NWT8 33602856
    19 6zm6:A3 (2.59) BS02 rna ? GO:0005515 ... Q9NWT8 33602856
    20 6zm6:A4 (2.59) BS01 rna ? GO:0003723 ... Q96EY7 33602856
    21 6zm6:AB (2.59) BS01 rna ? GO:0003735 ... Q9Y399 33602856
    22 6zm6:AB (2.59) BS02 MG ? GO:0003735 ... Q9Y399 33602856
    23 6zm6:AC (2.59) BS01 rna ? GO:0003723 ... Q96EL2 33602856
    24 6zm6:AD (2.59) BS01 rna ? GO:0003723 ... P82675 33602856
    25 6zm6:AD (2.59) BS02 rna ? GO:0003723 ... P82675 33602856
    26 6zm6:AE (2.59) BS01 rna ? GO:0003735 ... P82932 33602856
    27 6zm6:AF (2.59) BS01 rna ? GO:0000028 ... Q9Y2R9 33602856
    28 6zm6:AF (2.59) BS02 rna ? GO:0000028 ... Q9Y2R9 33602856
    29 6zm6:AG (2.59) BS01 rna ? GO:0003723 ... P82933 33602856
    30 6zm6:AG (2.59) BS02 rna ? GO:0003723 ... P82933 33602856
    31 6zm6:AH (2.59) BS01 rna ? GO:0003674 ... P82664 33602856
    32 6zm6:AI (2.59) BS01 rna ? GO:0003723 ... P82912 33602856
    33 6zm6:AJ (2.59) BS01 rna ? GO:0003723 ... O15235 33602856
    34 6zm6:AK (2.59) BS01 rna ? GO:0003723 ... O60783 33602856
    35 6zm6:AL (2.59) BS01 rna ? GO:0003723 ... P82914 33602856
    36 6zm6:AM (2.59) BS01 rna ? GO:0003735 ... Q9Y3D3 33602856
    37 6zm6:AN (2.59) BS01 rna ? GO:0003735 ... Q9Y2R5 33602856
    38 6zm6:AO (2.59) BS01 rna ? GO:0003735 ... Q9Y676 33602856
    39 6zm6:AO (2.59) BS02 ZN ? GO:0003735 ... Q9Y676 33602856
    40 6zm6:AP (2.59) BS01 rna ? GO:0003735 ... Q9Y3D5 33602856
    41 6zm6:AP (2.59) BS02 FES ? GO:0003735 ... Q9Y3D5 33602856
    42 6zm6:AQ (2.59) BS01 rna ? GO:0003723 ... P82921 33602856
    43 6zm6:AS (2.59) BS01 rna ? GO:0003723 ... Q9Y3D9 33602856
    44 6zm6:AT (2.59) BS01 rna ? GO:0003735 ... P82663 33602856
    45 6zm6:AT (2.59) BS02 FES ? GO:0003735 ... P82663 33602856
    46 6zm6:AU (2.59) BS01 rna ? GO:0003723 ... Q9BYN8 33602856
    47 6zm6:AV (2.59) BS01 rna ? GO:0000049 ... Q92552 33602856
    48 6zm6:AX (2.59) BS01 rna ? GO:0003723 ... P51398 33602856
    49 6zm6:AX (2.59) BS02 ATP ? GO:0003723 ... P51398 33602856
    50 6zm6:AX (2.59) BS03 GTP ? GO:0003723 ... P51398 33602856
    51 6zm6:AZ (2.59) BS01 rna ? GO:0003735 ... Q9Y291 33602856
    52 6zm6:D (2.59) BS01 rna ? GO:0003723 ... Q5T653 33602856
    53 6zm6:D (2.59) BS02 MG ? GO:0003723 ... Q5T653 33602856
    54 6zm6:E (2.59) BS01 rna ? GO:0003723 ... P09001 33602856
    55 6zm6:F (2.59) BS01 rna ? GO:0003723 ... Q9BYD3 33602856
    56 6zm6:H (2.59) BS01 rna ? GO:0003723 ... Q9BYD2 33602856
    57 6zm6:I (2.59) BS01 rna ? GO:0003723 ... Q7Z7H8 33602856
    58 6zm6:J (2.59) BS01 rna ? GO:0003723 ... Q9Y3B7 33602856
    59 6zm6:K (2.59) BS01 rna ? GO:0003723 ... Q9BYD1 33602856
    60 6zm6:L (2.59) BS01 rna ? GO:0003723 ... Q6P1L8 33602856
    61 6zm6:M (2.59) BS01 rna ? GO:0003723 ... Q9P015 33602856
    62 6zm6:N (2.59) BS01 rna ? GO:0003735 ... Q9NX20 33602856
    63 6zm6:N (2.59) BS02 rna ? GO:0003735 ... Q9NX20 33602856
    64 6zm6:O (2.59) BS01 rna ? GO:0003735 ... Q9NRX2 33602856
    65 6zm6:P (2.59) BS01 rna ? GO:0003723 ... Q9H0U6 33602856
    66 6zm6:P (2.59) BS02 rna ? GO:0003723 ... Q9H0U6 33602856
    67 6zm6:Q (2.59) BS01 rna ? GO:0003735 ... P49406 33602856
    68 6zm6:R (2.59) BS01 rna ? GO:0003723 ... Q9BYC9 33602856
    69 6zm6:S (2.59) BS01 rna ? GO:0003723 ... Q7Z2W9 33602856
    70 6zm6:T (2.59) BS01 rna ? GO:0003723 ... Q9NWU5 33602856
    71 6zm6:U (2.59) BS01 rna ? GO:0001650 ... Q16540 33602856
    72 6zm6:V (2.59) BS01 rna ? GO:0003723 ... Q96A35 33602856
    73 6zm6:W (2.59) BS01 rna ? GO:0003723 ... Q9P0M9 33602856
    74 6zm6:W (2.59) BS02 rna ? GO:0003723 ... Q9P0M9 33602856
    75 6zm6:X (2.59) BS01 rna ? GO:0003723 ... Q13084 33602856
    76 6zm6:Y (2.59) BS01 rna ? GO:0003674 ... Q9HD33 33602856
    77 6zm6:Z (2.59) BS01 rna ? GO:0003735 ... Q8TCC3 33602856
    78 6zm6:a (2.59) BS01 rna ? GO:0003723 ... Q9Y6G3 33602856
    79 6zm6:b (2.59) BS01 rna ? GO:0003723 ... Q8N983 33602856
    80 6zm6:c (2.59) BS01 rna 3.1.26.- GO:0003723 ... Q9H9J2 33602856
    81 6zm6:d (2.59) BS01 rna ? GO:0003723 ... Q9BRJ2 33602856
    82 6zm6:e (2.59) BS01 rna ? GO:0003674 ... Q9H2W6 33602856
    83 6zm6:f (2.59) BS01 rna ? GO:0005515 ... Q96GC5 33602856
    84 6zm6:f (2.59) BS02 rna ? GO:0005515 ... Q96GC5 33602856
    85 6zm6:g (2.59) BS01 rna ? GO:0003735 ... Q13405 33602856
    86 6zm6:i (2.59) BS01 rna ? GO:0003735 ... Q4U2R6 33602856
    87 6zm6:j (2.59) BS01 rna ? GO:0003735 ... Q86TS9 33602856
    88 6zm6:l (2.59) BS01 rna ? GO:0003723 ... Q6P161 33602856
    89 6zm6:o (2.59) BS01 rna ? GO:0003735 ... Q9BQC6 33602856
    90 6zm6:q (2.59) BS01 rna ? GO:0005515 ... Q8TAE8 33602856
    91 6zm6:r (2.59) BS01 rna ? GO:0003735 ... Q9NVS2 33602856
    92 6zm6:r (2.59) BS02 FES ? GO:0003735 ... Q9NVS2 33602856
    93 6zm6:s (2.59) BS01 rna ? GO:0003723 ... Q9NP92 33602856
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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