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BioLiP
Download all results in tab-seperated text for 63 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 6zif:A (2.2) BS01 CU1 N/A N/A N/A N/A
    2 6zif:A (2.2) BS02 CU1 N/A N/A N/A N/A
    3 6zif:A (2.2) BS03 CU1 N/A N/A N/A N/A
    4 6zif:A (2.2) BS04 CU1 N/A N/A N/A N/A
    5 6zif:A (2.2) BS05 CU1 N/A N/A N/A N/A
    6 6zif:A (2.2) BS06 CU1 N/A N/A N/A N/A
    7 6zif:A (2.2) BS07 CU1 N/A N/A N/A N/A
    8 6zif:A (2.2) BS08 CU1 N/A N/A N/A N/A
    9 6zif:A (2.2) BS09 CU1 N/A N/A N/A N/A
    10 6zif:A (2.2) BS10 CU1 N/A N/A N/A N/A
    11 6zif:A (2.2) BS11 CU1 N/A N/A N/A N/A
    12 6zif:A (2.2) BS12 CU1 N/A N/A N/A N/A
    13 6zif:A (2.2) BS13 CU1 N/A N/A N/A N/A
    14 6zif:A (2.2) BS14 CU1 N/A N/A N/A N/A
    15 6zif:A (2.2) BS15 CU1 N/A N/A N/A N/A
    16 6zif:A (2.2) BS16 ZN N/A N/A N/A N/A
    17 6zif:B (2.2) BS01 ZN N/A N/A N/A N/A
    18 6zif:B (2.2) BS02 CU1 N/A N/A N/A N/A
    19 6zif:B (2.2) BS03 CU1 N/A N/A N/A N/A
    20 6zif:B (2.2) BS04 CU1 N/A N/A N/A N/A
    21 6zif:B (2.2) BS05 CU1 N/A N/A N/A N/A
    22 6zif:B (2.2) BS06 CU1 N/A N/A N/A N/A
    23 6zif:B (2.2) BS07 CU1 N/A N/A N/A N/A
    24 6zif:B (2.2) BS08 CU1 N/A N/A N/A N/A
    25 6zif:B (2.2) BS09 CU1 N/A N/A N/A N/A
    26 6zif:B (2.2) BS10 CU1 N/A N/A N/A N/A
    27 6zif:B (2.2) BS11 CU1 N/A N/A N/A N/A
    28 6zif:B (2.2) BS12 CU1 N/A N/A N/A N/A
    29 6zif:B (2.2) BS13 CU1 N/A N/A N/A N/A
    30 6zif:B (2.2) BS14 CU1 N/A N/A N/A N/A
    31 6zif:B (2.2) BS15 CU1 N/A N/A N/A N/A
    32 6zif:C (2.2) BS01 CU1 N/A N/A N/A N/A
    33 6zif:C (2.2) BS02 CU1 N/A N/A N/A N/A
    34 6zif:C (2.2) BS03 CU1 N/A N/A N/A N/A
    35 6zif:C (2.2) BS04 CU1 N/A N/A N/A N/A
    36 6zif:C (2.2) BS05 CU1 N/A N/A N/A N/A
    37 6zif:C (2.2) BS06 CU1 N/A N/A N/A N/A
    38 6zif:C (2.2) BS07 CU1 N/A N/A N/A N/A
    39 6zif:C (2.2) BS08 CU1 N/A N/A N/A N/A
    40 6zif:C (2.2) BS09 CU1 N/A N/A N/A N/A
    41 6zif:C (2.2) BS10 CU1 N/A N/A N/A N/A
    42 6zif:C (2.2) BS11 CU1 N/A N/A N/A N/A
    43 6zif:C (2.2) BS12 CU1 N/A N/A N/A N/A
    44 6zif:C (2.2) BS13 CU1 N/A N/A N/A N/A
    45 6zif:C (2.2) BS14 CU1 N/A N/A N/A N/A
    46 6zif:C (2.2) BS15 CU1 N/A N/A N/A N/A
    47 6zif:C (2.2) BS16 ZN N/A N/A N/A N/A
    48 6zif:D (2.2) BS01 ZN N/A N/A N/A N/A
    49 6zif:D (2.2) BS02 CU1 N/A N/A N/A N/A
    50 6zif:D (2.2) BS03 CU1 N/A N/A N/A N/A
    51 6zif:D (2.2) BS04 CU1 N/A N/A N/A N/A
    52 6zif:D (2.2) BS05 CU1 N/A N/A N/A N/A
    53 6zif:D (2.2) BS06 CU1 N/A N/A N/A N/A
    54 6zif:D (2.2) BS07 CU1 N/A N/A N/A N/A
    55 6zif:D (2.2) BS08 CU1 N/A N/A N/A N/A
    56 6zif:D (2.2) BS09 CU1 N/A N/A N/A N/A
    57 6zif:D (2.2) BS10 CU1 N/A N/A N/A N/A
    58 6zif:D (2.2) BS11 CU1 N/A N/A N/A N/A
    59 6zif:D (2.2) BS12 CU1 N/A N/A N/A N/A
    60 6zif:D (2.2) BS13 CU1 N/A N/A N/A N/A
    61 6zif:D (2.2) BS14 CU1 N/A N/A N/A N/A
    62 6zif:D (2.2) BS15 CU1 N/A N/A N/A N/A
    63 6zif:D (2.2) BS16 CU1 N/A N/A N/A N/A
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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