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BioLiP
Download all results in tab-seperated text for 79 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 6yxx:A1 (3.9) BS01 rna ? GO:0003735 ... Q586A2 32679035
    2 6yxx:A2 (3.9) BS01 rna ? GO:0003735 ... Q38EM7 32679035
    3 6yxx:A3 (3.9) BS01 rna ? N/A C9ZY77 32679035
    4 6yxx:A5 (3.9) BS01 rna ? GO:0005634 ... Q584F4 32679035
    5 6yxx:A5 (3.9) BS02 ZN ? GO:0005634 ... Q584F4 32679035
    6 6yxx:A8 (3.9) BS01 rna ? N/A D0A1K1 32679035
    7 6yxx:A8 (3.9) BS02 MG ? N/A D0A1K1 32679035
    8 6yxx:AE (3.9) BS01 rna ? GO:0003735 ... Q580R4 32679035
    9 6yxx:AF (3.9) BS01 rna ? GO:0003735 ... A0A1G4HYD1 32679035
    10 6yxx:AF (3.9) BS02 NAD ? GO:0003735 ... A0A1G4HYD1 32679035
    11 6yxx:AI (3.9) BS01 rna ? GO:0003735 ... Q57UC5 32679035
    12 6yxx:AN (3.9) BS01 rna ? GO:0003729 ... Q580D5 32679035
    13 6yxx:AP (3.9) BS01 rna ? GO:0003735 ... Q57U68 32679035
    14 6yxx:AP (3.9) BS02 NAD ? GO:0003735 ... Q57U68 32679035
    15 6yxx:AR (3.9) BS01 rna ? GO:0000315 ... Q57YI7 32679035
    16 6yxx:AT (3.9) BS01 rna ? GO:0005737 ... Q4GZ98 32679035
    17 6yxx:AU (3.9) BS01 rna ? GO:0003735 ... Q383R2 32679035
    18 6yxx:AV (3.9) BS01 rna ? GO:0003723 ... C9ZT11 32679035
    19 6yxx:AW (3.9) BS01 rna ? GO:0003735 ... C9ZSI8 32679035
    20 6yxx:AX (3.9) BS01 rna ? GO:0003735 ... Q387G3 32679035
    21 6yxx:AY (3.9) BS01 rna ? GO:0003723 ... C9ZK52 32679035
    22 6yxx:Ae (3.9) BS01 rna ? GO:0005654 ... Q383U6 32679035
    23 6yxx:Af (3.9) BS01 rna ? GO:0005739 ... Q383S1 32679035
    24 6yxx:Ag (3.9) BS01 rna ? GO:0003735 ... Q583E5 32679035
    25 6yxx:Al (3.9) BS01 rna ? GO:0005739 ... Q57Z82 32679035
    26 6yxx:Ao (3.9) BS01 rna N/A N/A N/A 32679035
    27 6yxx:Ap (3.9) BS01 rna ? N/A A0A3L6L3K9 32679035
    28 6yxx:At (3.9) BS01 rna ? N/A C9ZU82 32679035
    29 6yxx:Av (3.9) BS01 rna ? N/A D0A934 32679035
    30 6yxx:Av (3.9) BS02 NAD ? N/A D0A934 32679035
    31 6yxx:BA (3.9) BS01 rna ? N/A D0A5V6 32679035
    32 6yxx:BE (3.9) BS01 rna ? GO:0005739 ... Q57WG1 32679035
    33 6yxx:BF (3.9) BS01 rna ? N/A A0A3L6LA84 32679035
    34 6yxx:BI (3.9) BS01 rna ? N/A D0A108 32679035
    35 6yxx:BJ (3.9) BS01 peptide ? GO:0005739 ... Q383M2 32679035
    36 6yxx:BK (3.9) BS01 rna ? N/A C9ZQR6 32679035
    37 6yxx:BK (3.9) BS02 peptide ? N/A C9ZQR6 32679035
    38 6yxx:BL (3.9) BS01 rna ? N/A D0A4P5 32679035
    39 6yxx:BO (3.9) BS01 rna ? N/A D0A755 32679035
    40 6yxx:BQ (3.9) BS01 rna 5.2.1.8 GO:0000413 ... Q57WF8 32679035
    41 6yxx:BR (3.9) BS01 rna ? GO:0005739 ... Q586A6 32679035
    42 6yxx:BS (3.9) BS01 rna ? GO:0005737 ... Q38FG8 32679035
    43 6yxx:BT (3.9) BS01 rna ? N/A A0A3L6L8W0 32679035
    44 6yxx:BU (3.9) BS01 rna ? N/A D0A7Z9 32679035
    45 6yxx:BU (3.9) BS02 peptide ? N/A D0A7Z9 32679035
    46 6yxx:BW (3.9) BS01 rna ? GO:0005739 ... Q57WW5 32679035
    47 6yxx:Ba (3.9) BS01 rna ? N/A D0A4T0 32679035
    48 6yxx:Bc (3.9) BS01 rna ? GO:0005739 ... Q389K3 32679035
    49 6yxx:E1 (3.9) BS01 rna ? GO:0005739 ... Q57WG6 32679035
    50 6yxx:E2 (3.9) BS01 rna ? N/A C9ZTN9 32679035
    51 6yxx:E2 (3.9) BS02 ZN ? N/A C9ZTN9 32679035
    52 6yxx:E2 (3.9) BS03 ZN ? N/A C9ZTN9 32679035
    53 6yxx:E2 (3.9) BS04 ZN ? N/A C9ZTN9 32679035
    54 6yxx:E2 (3.9) BS05 ZN ? N/A C9ZTN9 32679035
    55 6yxx:E3 (3.9) BS01 peptide ? N/A D0A795 32679035
    56 6yxx:E7 (3.9) BS01 rna N/A N/A N/A 32679035
    57 6yxx:E8 (3.9) BS01 rna ? GO:0005739 ... Q57YZ6 32679035
    58 6yxx:E9 (3.9) BS01 rna ? N/A A0A3L6L206 32679035
    59 6yxx:E9 (3.9) BS02 ZN ? N/A A0A3L6L206 32679035
    60 6yxx:EA (3.9) BS01 rna ? GO:0005525 ... Q57TZ4 32679035
    61 6yxx:EA (3.9) BS02 GTP ? GO:0005525 ... Q57TZ4 32679035
    62 6yxx:EA (3.9) BS03 MG ? GO:0005525 ... Q57TZ4 32679035
    63 6yxx:EA (3.9) BS04 GTP ? GO:0005525 ... Q57TZ4 32679035
    64 6yxx:EA (3.9) BS05 MG ? GO:0005525 ... Q57TZ4 32679035
    65 6yxx:EB (3.9) BS01 rna ? GO:0003676 ... D0A9G9 32679035
    66 6yxx:EB (3.9) BS02 ATP ? GO:0003676 ... D0A9G9 32679035
    67 6yxx:EC (3.9) BS01 rna ? GO:0001522 ... Q38FJ3 32679035
    68 6yxx:ED (3.9) BS01 rna ? GO:0001522 ... Q385G9 32679035
    69 6yxx:EE (3.9) BS01 rna ? GO:0003723 ... C9ZZ65 32679035
    70 6yxx:EF (3.9) BS01 rna ? GO:0003723 ... C9ZWD9 32679035
    71 6yxx:EG (3.9) BS01 rna ? GO:0005730 ... Q387S8 32679035
    72 6yxx:EG (3.9) BS02 ZN ? GO:0005730 ... Q387S8 32679035
    73 6yxx:EL (3.9) BS01 rna ? N/A C9ZVC0 32679035
    74 6yxx:EL (3.9) BS02 peptide ? N/A C9ZVC0 32679035
    75 6yxx:EM (3.9) BS01 rna ? GO:0003924 ... Q38E75 32679035
    76 6yxx:EM (3.9) BS02 peptide ? GO:0003924 ... Q38E75 32679035
    77 6yxx:EN (3.9) BS01 rna ? N/A C9ZPS0 32679035
    78 6yxx:ES (3.9) BS01 PM8 ? GO:0006629 ... A0A3L6L1Y4 32679035
    79 6yxx:ET (3.9) BS01 rna ? GO:0005739 ... Q383S4 32679035
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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