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BioLiP
Download all results in tab-seperated text for 66 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 6yns:A (3.94) BS01 peptide ? GO:0000086 ... P0DP23 33977052
    2 6yns:A (3.94) BS02 peptide ? GO:0000086 ... P0DP23 33977052
    3 6yns:A (3.94) BS03 peptide ? GO:0000086 ... P0DP23 33977052
    4 6yns:A (3.94) BS04 CA ? GO:0000086 ... P0DP23 33977052
    5 6yns:A (3.94) BS05 CA ? GO:0000086 ... P0DP23 33977052
    6 6yns:A (3.94) BS06 CA ? GO:0000086 ... P0DP23 33977052
    7 6yns:A (3.94) BS07 CA ? GO:0000086 ... P0DP23 33977052
    8 6yns:B (3.94) BS01 peptide ? GO:0000086 ... P0DP23 33977052
    9 6yns:B (3.94) BS02 peptide ? GO:0000086 ... P0DP23 33977052
    10 6yns:B (3.94) BS03 peptide ? GO:0000086 ... P0DP23 33977052
    11 6yns:B (3.94) BS04 peptide ? GO:0000086 ... P0DP23 33977052
    12 6yns:B (3.94) BS05 CA ? GO:0000086 ... P0DP23 33977052
    13 6yns:B (3.94) BS06 CA ? GO:0000086 ... P0DP23 33977052
    14 6yns:B (3.94) BS07 CA ? GO:0000086 ... P0DP23 33977052
    15 6yns:B (3.94) BS08 CA ? GO:0000086 ... P0DP23 33977052
    16 6yns:C (3.94) BS01 peptide ? GO:0000086 ... P0DP23 33977052
    17 6yns:C (3.94) BS02 peptide ? GO:0000086 ... P0DP23 33977052
    18 6yns:C (3.94) BS03 peptide ? GO:0000086 ... P0DP23 33977052
    19 6yns:C (3.94) BS04 CA ? GO:0000086 ... P0DP23 33977052
    20 6yns:C (3.94) BS05 CA ? GO:0000086 ... P0DP23 33977052
    21 6yns:D (3.94) BS01 peptide ? GO:0000086 ... P0DP23 33977052
    22 6yns:D (3.94) BS02 peptide ? GO:0000086 ... P0DP23 33977052
    23 6yns:D (3.94) BS03 peptide ? GO:0000086 ... P0DP23 33977052
    24 6yns:D (3.94) BS04 CA ? GO:0000086 ... P0DP23 33977052
    25 6yns:D (3.94) BS05 CA ? GO:0000086 ... P0DP23 33977052
    26 6yns:E (3.94) BS01 peptide ? GO:0000086 ... P0DP23 33977052
    27 6yns:E (3.94) BS02 peptide ? GO:0000086 ... P0DP23 33977052
    28 6yns:E (3.94) BS03 peptide ? GO:0000086 ... P0DP23 33977052
    29 6yns:E (3.94) BS04 peptide ? GO:0000086 ... P0DP23 33977052
    30 6yns:E (3.94) BS05 CA ? GO:0000086 ... P0DP23 33977052
    31 6yns:E (3.94) BS06 CA ? GO:0000086 ... P0DP23 33977052
    32 6yns:F (3.94) BS01 peptide ? GO:0000086 ... P0DP23 33977052
    33 6yns:F (3.94) BS02 peptide ? GO:0000086 ... P0DP23 33977052
    34 6yns:F (3.94) BS03 peptide ? GO:0000086 ... P0DP23 33977052
    35 6yns:F (3.94) BS04 CA ? GO:0000086 ... P0DP23 33977052
    36 6yns:F (3.94) BS05 CA ? GO:0000086 ... P0DP23 33977052
    37 6yns:G (3.94) BS01 peptide ? GO:0000086 ... P0DP23 33977052
    38 6yns:G (3.94) BS02 peptide ? GO:0000086 ... P0DP23 33977052
    39 6yns:G (3.94) BS03 peptide ? GO:0000086 ... P0DP23 33977052
    40 6yns:G (3.94) BS04 CA ? GO:0000086 ... P0DP23 33977052
    41 6yns:G (3.94) BS05 CA ? GO:0000086 ... P0DP23 33977052
    42 6yns:H (3.94) BS01 peptide ? GO:0000086 ... P0DP23 33977052
    43 6yns:H (3.94) BS02 peptide ? GO:0000086 ... P0DP23 33977052
    44 6yns:H (3.94) BS03 peptide ? GO:0000086 ... P0DP23 33977052
    45 6yns:H (3.94) BS04 peptide ? GO:0000086 ... P0DP23 33977052
    46 6yns:H (3.94) BS05 CA ? GO:0000086 ... P0DP23 33977052
    47 6yns:H (3.94) BS06 CA ? GO:0000086 ... P0DP23 33977052
    48 6yns:I (3.94) BS01 peptide ? GO:0000086 ... P0DP23 33977052
    49 6yns:I (3.94) BS02 peptide ? GO:0000086 ... P0DP23 33977052
    50 6yns:I (3.94) BS03 peptide ? GO:0000086 ... P0DP23 33977052
    51 6yns:I (3.94) BS04 CA ? GO:0000086 ... P0DP23 33977052
    52 6yns:I (3.94) BS05 CA ? GO:0000086 ... P0DP23 33977052
    53 6yns:J (3.94) BS01 peptide ? GO:0000086 ... P0DP23 33977052
    54 6yns:J (3.94) BS02 peptide ? GO:0000086 ... P0DP23 33977052
    55 6yns:J (3.94) BS03 peptide ? GO:0000086 ... P0DP23 33977052
    56 6yns:J (3.94) BS04 CA ? GO:0000086 ... P0DP23 33977052
    57 6yns:J (3.94) BS05 CA ? GO:0000086 ... P0DP23 33977052
    58 6yns:K (3.94) BS01 peptide ? GO:0000086 ... P0DP23 33977052
    59 6yns:K (3.94) BS02 peptide ? GO:0000086 ... P0DP23 33977052
    60 6yns:K (3.94) BS03 peptide ? GO:0000086 ... P0DP23 33977052
    61 6yns:K (3.94) BS04 CA ? GO:0000086 ... P0DP23 33977052
    62 6yns:K (3.94) BS05 CA ? GO:0000086 ... P0DP23 33977052
    63 6yns:K (3.94) BS06 CA ? GO:0000086 ... P0DP23 33977052
    64 6yns:L (3.94) BS01 peptide ? GO:0000086 ... P0DP23 33977052
    65 6yns:L (3.94) BS02 peptide ? GO:0000086 ... P0DP23 33977052
    66 6yns:L (3.94) BS03 CA ? GO:0000086 ... P0DP23 33977052
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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