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BioLiP
Download all results in tab-seperated text for 18 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 6ybs:V (3.1) BS01 rna ? GO:0000028 ... P46782 32883864
    2 6ybs:V (3.1) BS02 MG ? GO:0000028 ... P46782 32883864
    3 6ybs:X (3.1) BS01 rna ? GO:0002181 ... P08708 32883864
    4 6ybs:Y (3.1) BS01 rna ? GO:0000462 ... P62249 32883864
    5 6ybs:Z (3.1) BS01 rna 4.2.99.18 GO:0000977 ... P23396 32883864
    6 6ybs:a (3.1) BS01 rna ? GO:0002181 ... P46783 32883864
    7 6ybs:b (3.1) BS01 rna ? GO:0000028 ... P62841 32883864
    8 6ybs:c (3.1) BS01 rna ? GO:0001891 ... P63244 32883864
    9 6ybs:d (3.1) BS01 rna ? GO:0000028 ... P39019 32883864
    10 6ybs:e (3.1) BS01 rna ? GO:0002181 ... P62851 32883864
    11 6ybs:f (3.1) BS01 rna ? GO:0002181 ... P62269 32883864
    12 6ybs:f (3.1) BS02 MG ? GO:0002181 ... P62269 32883864
    13 6ybs:h (3.1) BS01 rna ? GO:0002181 ... P60866 32883864
    14 6ybs:i (3.1) BS01 rna ? GO:0002181 ... P62273 32883864
    15 6ybs:k (3.1) BS01 rna ? GO:0002181 ... P62979 32883864
    16 6ybs:k (3.1) BS02 ZN ? GO:0002181 ... P62979 32883864
    17 6ybs:m (3.1) BS01 rna ? GO:0002181 ... P25398 32883864
    18 6ybs:n (3.1) BS01 rna ? GO:0000028 ... P62857 32883864
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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