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BioLiP
Download all results in tab-seperated text for 109 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 6xa1:LA (2.8) BS01 rna ? GO:0002181 ... P62917 33009412
    2 6xa1:LA (2.8) BS02 rna ? GO:0002181 ... P62917 33009412
    3 6xa1:LB (2.8) BS01 rna ? GO:0002181 ... P39023 33009412
    4 6xa1:LC (2.8) BS01 rna ? GO:0003735 ... P36578 33009412
    5 6xa1:LC (2.8) BS02 rna ? GO:0003735 ... P36578 33009412
    6 6xa1:LC (2.8) BS03 peptide ? GO:0003735 ... P36578 33009412
    7 6xa1:LD (2.8) BS01 rna ? GO:0000027 ... P46777 33009412
    8 6xa1:LD (2.8) BS02 rna ? GO:0000027 ... P46777 33009412
    9 6xa1:LE (2.8) BS01 rna ? GO:0003735 ... Q02878 33009412
    10 6xa1:LF (2.8) BS01 rna ? GO:0000463 ... P18124 33009412
    11 6xa1:LF (2.8) BS02 rna ? GO:0000463 ... P18124 33009412
    12 6xa1:LG (2.8) BS01 rna ? GO:0000470 ... P62424 33009412
    13 6xa1:LG (2.8) BS02 rna ? GO:0000470 ... P62424 33009412
    14 6xa1:LH (2.8) BS01 rna ? GO:0002181 ... P32969 33009412
    15 6xa1:LI (2.8) BS01 rna ? GO:0000027 ... Q96L21 33009412
    16 6xa1:LI (2.8) BS02 rna ? GO:0000027 ... Q96L21 33009412
    17 6xa1:LJ (2.8) BS01 rna ? GO:0000027 ... P62913 33009412
    18 6xa1:LJ (2.8) BS02 rna ? GO:0000027 ... P62913 33009412
    19 6xa1:LJ (2.8) BS03 rna ? GO:0000027 ... P62913 33009412
    20 6xa1:LL (2.8) BS01 rna ? GO:0001824 ... P26373 33009412
    21 6xa1:LL (2.8) BS02 rna ? GO:0001824 ... P26373 33009412
    22 6xa1:LM (2.8) BS01 rna ? GO:0003723 ... P50914 33009412
    23 6xa1:LN (2.8) BS01 rna ? GO:0002181 ... P61313 33009412
    24 6xa1:LN (2.8) BS02 rna ? GO:0002181 ... P61313 33009412
    25 6xa1:LO (2.8) BS01 rna ? GO:0002181 ... P40429 33009412
    26 6xa1:LP (2.8) BS01 rna ? GO:0003735 ... P18621 33009412
    27 6xa1:LP (2.8) BS02 rna ? GO:0003735 ... P18621 33009412
    28 6xa1:LQ (2.8) BS01 rna ? GO:0002181 ... Q07020 33009412
    29 6xa1:LR (2.8) BS01 rna ? GO:0002181 ... P84098 33009412
    30 6xa1:LR (2.8) BS02 rna ? GO:0002181 ... P84098 33009412
    31 6xa1:LS (2.8) BS01 rna ? GO:0002181 ... Q02543 33009412
    32 6xa1:LS (2.8) BS02 rna ? GO:0002181 ... Q02543 33009412
    33 6xa1:LT (2.8) BS01 rna ? GO:0002181 ... P46778 33009412
    34 6xa1:LT (2.8) BS02 rna ? GO:0002181 ... P46778 33009412
    35 6xa1:LU (2.8) BS01 rna ? GO:0003735 ... Q7Z4W8 33009412
    36 6xa1:LV (2.8) BS01 rna ? GO:0000122 ... P62829 33009412
    37 6xa1:LW (2.8) BS01 rna ? N/A P83731 33009412
    38 6xa1:LW (2.8) BS02 rna ? N/A P83731 33009412
    39 6xa1:LX (2.8) BS01 rna ? GO:0003735 ... P62750 33009412
    40 6xa1:LX (2.8) BS02 rna ? GO:0003735 ... P62750 33009412
    41 6xa1:LY (2.8) BS01 rna ? GO:0002181 ... P61254 33009412
    42 6xa1:LY (2.8) BS02 rna ? GO:0002181 ... P61254 33009412
    43 6xa1:LZ (2.8) BS01 rna ? GO:0002181 ... P61353 33009412
    44 6xa1:La (2.8) BS01 rna ? GO:0002181 ... P46776 33009412
    45 6xa1:Lb (2.8) BS01 rna ? GO:0003735 ... P47914 33009412
    46 6xa1:Lc (2.8) BS01 rna ? GO:0003723 ... P62888 33009412
    47 6xa1:Ld (2.8) BS01 rna ? GO:0003735 ... P62899 33009412
    48 6xa1:Le (2.8) BS01 rna ? GO:0002181 ... P62910 33009412
    49 6xa1:Lf (2.8) BS01 rna ? GO:0000049 ... P18077 33009412
    50 6xa1:Lg (2.8) BS01 rna ? GO:0002181 ... P49207 33009412
    51 6xa1:Lg (2.8) BS02 ZN ? GO:0002181 ... P49207 33009412
    52 6xa1:Lh (2.8) BS01 rna ? GO:0000463 ... P42766 33009412
    53 6xa1:Lh (2.8) BS02 rna ? GO:0000463 ... P42766 33009412
    54 6xa1:Li (2.8) BS01 rna ? GO:0002181 ... Q9Y3U8 33009412
    55 6xa1:Lj (2.8) BS01 rna ? GO:0003735 ... P61927 33009412
    56 6xa1:Lj (2.8) BS02 rna ? GO:0003735 ... P61927 33009412
    57 6xa1:Lj (2.8) BS03 ZN ? GO:0003735 ... P61927 33009412
    58 6xa1:Lk (2.8) BS01 rna ? GO:0001501 ... P63173 33009412
    59 6xa1:Ll (2.8) BS01 rna ? GO:0002181 ... P62891 33009412
    60 6xa1:Ll (2.8) BS02 rna ? GO:0002181 ... P62891 33009412
    61 6xa1:Lm (2.8) BS01 rna ? GO:0003735 ... P62987 33009412
    62 6xa1:Lm (2.8) BS02 ZN ? GO:0003735 ... P62987 33009412
    63 6xa1:Lo (2.8) BS01 rna ? GO:0002181 ... P83881 33009412
    64 6xa1:Lo (2.8) BS02 rna ? GO:0002181 ... P83881 33009412
    65 6xa1:Lo (2.8) BS03 ZN ? GO:0002181 ... P83881 33009412
    66 6xa1:Lp (2.8) BS01 rna ? GO:0002181 ... P61513 33009412
    67 6xa1:Lp (2.8) BS02 ZN ? GO:0002181 ... P61513 33009412
    68 6xa1:Lr (2.8) BS01 rna ? GO:0002181 ... P46779 33009412
    69 6xa1:SA (2.8) BS01 rna ? GO:0003735 ... P08865 33009412
    70 6xa1:SB (2.8) BS01 rna ? GO:0003735 ... P61247 33009412
    71 6xa1:SC (2.8) BS01 rna ? GO:0003723 ... P15880 33009412
    72 6xa1:SD (2.8) BS01 rna 4.2.99.18 GO:0000977 ... P23396 33009412
    73 6xa1:SE (2.8) BS01 rna ? GO:0002181 ... P62701 33009412
    74 6xa1:SF (2.8) BS01 rna ? GO:0000028 ... P46782 33009412
    75 6xa1:SG (2.8) BS01 rna ? GO:0000082 ... P62753 33009412
    76 6xa1:SH (2.8) BS01 rna ? GO:0001843 ... P62081 33009412
    77 6xa1:SI (2.8) BS01 rna ? GO:0000462 ... P62241 33009412
    78 6xa1:SI (2.8) BS02 rna ? GO:0000462 ... P62241 33009412
    79 6xa1:SJ (2.8) BS01 rna ? GO:0002181 ... P46781 33009412
    80 6xa1:SK (2.8) BS01 rna ? N/A P46783 33009412
    81 6xa1:SL (2.8) BS01 rna ? GO:0002181 ... P62280 33009412
    82 6xa1:SL (2.8) BS02 rna ? GO:0002181 ... P62280 33009412
    83 6xa1:SM (2.8) BS01 rna ? GO:0002181 ... P25398 33009412
    84 6xa1:SN (2.8) BS01 rna ? GO:0002181 ... P62277 33009412
    85 6xa1:SO (2.8) BS01 rna ? GO:0003735 ... P62263 33009412
    86 6xa1:SP (2.8) BS01 rna ? GO:0000028 ... P62841 33009412
    87 6xa1:SQ (2.8) BS01 rna ? GO:0000462 ... P62249 33009412
    88 6xa1:SR (2.8) BS01 rna ? GO:0002181 ... P08708 33009412
    89 6xa1:SS (2.8) BS01 rna ? GO:0002181 ... P62269 33009412
    90 6xa1:ST (2.8) BS01 rna ? GO:0000028 ... P39019 33009412
    91 6xa1:SU (2.8) BS01 rna ? GO:0003723 ... P60866 33009412
    92 6xa1:SW (2.8) BS01 rna ? GO:0002181 ... P62244 33009412
    93 6xa1:SX (2.8) BS01 rna ? GO:0002181 ... P62266 33009412
    94 6xa1:SY (2.8) BS01 rna ? GO:0002181 ... P62847 33009412
    95 6xa1:SZ (2.8) BS01 rna ? N/A P62851 33009412
    96 6xa1:Sa (2.8) BS01 rna ? GO:0003735 ... P62854 33009412
    97 6xa1:Sa (2.8) BS02 ZN ? GO:0003735 ... P62854 33009412
    98 6xa1:Sb (2.8) BS01 rna ? GO:0000028 ... P42677 33009412
    99 6xa1:Sc (2.8) BS01 rna ? GO:0003735 ... P62857 33009412
    100 6xa1:Sd (2.8) BS01 rna ? GO:0002181 ... P62273 33009412
    101 6xa1:Sd (2.8) BS02 ZN ? GO:0002181 ... P62273 33009412
    102 6xa1:Se (2.8) BS01 rna ? GO:0003735 ... E9PR30 33009412
    103 6xa1:Sf (2.8) BS01 rna ? GO:0003735 ... P62979 33009412
    104 6xa1:Sf (2.8) BS02 ZN ? GO:0003735 ... P62979 33009412
    105 6xa1:Sg (2.8) BS01 rna ? GO:0001891 ... P63244 33009412
    106 6xa1:j (2.8) BS01 rna ? GO:0000184 ... P62495 33009412
    107 6xa1:j (2.8) BS02 rna ? GO:0000184 ... P62495 33009412
    108 6xa1:j (2.8) BS03 rna ? GO:0000184 ... P62495 33009412
    109 6xa1:j (2.8) BS04 rna ? GO:0000184 ... P62495 33009412
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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