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BioLiP
Download all results in tab-seperated text for 21 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 6wm2:0 (3.1) BS01 WSS ? GO:0000139 ... Q99437 33065002
    2 6wm2:0 (3.1) BS02 WSS ? GO:0000139 ... Q99437 33065002
    3 6wm2:0 (3.1) BS03 WSS ? GO:0000139 ... Q99437 33065002
    4 6wm2:0 (3.1) BS04 WSS ? GO:0000139 ... Q99437 33065002
    5 6wm2:0 (3.1) BS05 WSS ? GO:0000139 ... Q99437 33065002
    6 6wm2:3 (3.1) BS01 WSS ? GO:0000139 ... P27449 33065002
    7 6wm2:C (3.1) BS01 ADP 7.1.2.2 GO:0000139 ... P38606 33065002
    8 6wm2:F (3.1) BS01 ADP ? GO:0000221 ... P21281 33065002
    9 6wm2:R (3.1) BS01 SIA ? GO:0000220 ... Q93050 33065002
    10 6wm2:R (3.1) BS02 BMA ? GO:0000220 ... Q93050 33065002
    11 6wm2:R (3.1) BS03 MAN ? GO:0000220 ... Q93050 33065002
    12 6wm2:R (3.1) BS04 CLR ? GO:0000220 ... Q93050 33065002
    13 6wm2:R (3.1) BS05 WJP ? GO:0000220 ... Q93050 33065002
    14 6wm2:T (3.1) BS01 WSS 3.1.-.- GO:0000139 ... Q6P5S7 33065002
    15 6wm2:U (3.1) BS01 WSS ? N/A Q15904 33065002
    16 6wm2:U (3.1) BS02 WSS ? N/A Q15904 33065002
    17 6wm2:U (3.1) BS03 WSS ? N/A Q15904 33065002
    18 6wm2:V (3.1) BS01 WSS ? GO:0016020 ... O75787 33065002
    19 6wm2:V (3.1) BS02 WSS ? GO:0016020 ... O75787 33065002
    20 6wm2:V (3.1) BS03 WSS ? GO:0016020 ... O75787 33065002
    21 6wm2:V (3.1) BS04 WSS ? GO:0016020 ... O75787 33065002
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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