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BioLiP
Download all results in tab-seperated text for 68 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 6vz7:0 (7.0) BS01 rna ? GO:0002181 ... P0AG48 32820061
    2 6vz7:1 (7.0) BS01 rna ? GO:0002181 ... P61175 32820061
    3 6vz7:2 (7.0) BS01 rna ? GO:0000027 ... P0ADZ0 32820061
    4 6vz7:3 (7.0) BS01 rna ? GO:0000027 ... P60624 32820061
    5 6vz7:4 (7.0) BS01 rna ? GO:0000027 ... P68919 32820061
    6 6vz7:AA (7.0) BS01 dna 2.7.7.6 GO:0000345 ... P0A8V2 32820061
    7 6vz7:AA (7.0) BS02 dna 2.7.7.6 GO:0000345 ... P0A8V2 32820061
    8 6vz7:AA (7.0) BS03 rna 2.7.7.6 GO:0000345 ... P0A8V2 32820061
    9 6vz7:AB (7.0) BS01 dna ? GO:0006354 ... P0AFG0 32820061
    10 6vz7:AE (7.0) BS01 dna 2.7.7.6 GO:0000287 ... P0A8T7 32820061
    11 6vz7:AE (7.0) BS02 dna 2.7.7.6 GO:0000287 ... P0A8T7 32820061
    12 6vz7:AE (7.0) BS03 rna 2.7.7.6 GO:0000287 ... P0A8T7 32820061
    13 6vz7:AE (7.0) BS04 MG 2.7.7.6 GO:0000287 ... P0A8T7 32820061
    14 6vz7:AE (7.0) BS05 ZN 2.7.7.6 GO:0000287 ... P0A8T7 32820061
    15 6vz7:AE (7.0) BS06 ZN 2.7.7.6 GO:0000287 ... P0A8T7 32820061
    16 6vz7:C (7.0) BS01 rna ? GO:0003735 ... P0A7T7 32820061
    17 6vz7:E (7.0) BS01 rna ? GO:0000028 ... P0A7U7 32820061
    18 6vz7:F (7.0) BS01 rna ? GO:0000028 ... P68679 32820061
    19 6vz7:G (7.0) BS01 rna ? GO:0000028 ... P0A7V0 32820061
    20 6vz7:I (7.0) BS01 rna ? GO:0003676 ... P0A7V3 32820061
    21 6vz7:J (7.0) BS01 rna ? GO:0000028 ... P0A7V8 32820061
    22 6vz7:K (7.0) BS01 rna ? GO:0000028 ... P0A7W1 32820061
    23 6vz7:L (7.0) BS01 rna ? GO:0003735 ... P02358 32820061
    24 6vz7:M (7.0) BS01 rna ? GO:0003723 ... P02359 32820061
    25 6vz7:M (7.0) BS02 rna ? GO:0003723 ... P02359 32820061
    26 6vz7:N (7.0) BS01 rna ? GO:0000028 ... P0A7W7 32820061
    27 6vz7:O (7.0) BS01 rna ? GO:0000049 ... P0A7X3 32820061
    28 6vz7:P (7.0) BS01 rna ? GO:0000049 ... P0A7R5 32820061
    29 6vz7:Q (7.0) BS01 rna ? GO:0002181 ... P0A7R9 32820061
    30 6vz7:R (7.0) BS01 rna ? GO:0000049 ... P0A7S3 32820061
    31 6vz7:S (7.0) BS01 rna ? GO:0000028 ... P0AG59 32820061
    32 6vz7:T (7.0) BS01 rna ? GO:0000028 ... P0ADZ4 32820061
    33 6vz7:T (7.0) BS02 rna ? GO:0000028 ... P0ADZ4 32820061
    34 6vz7:U (7.0) BS01 rna ? GO:0000028 ... P0A7T3 32820061
    35 6vz7:V (7.0) BS01 rna ? GO:0000028 ... P0AG63 32820061
    36 6vz7:W (7.0) BS01 rna ? GO:0000028 ... P0A7U3 32820061
    37 6vz7:X (7.0) BS01 rna ? GO:0000049 ... P0A7S9 32820061
    38 6vz7:X (7.0) BS02 rna ? GO:0000049 ... P0A7S9 32820061
    39 6vz7:b (7.0) BS01 rna ? GO:0003735 ... P0A7L8 32820061
    40 6vz7:b (7.0) BS02 rna ? GO:0003735 ... P0A7L8 32820061
    41 6vz7:c (7.0) BS01 rna ? GO:0000027 ... P0A7M2 32820061
    42 6vz7:e (7.0) BS01 rna ? GO:0000027 ... P0A7M6 32820061
    43 6vz7:f (7.0) BS01 rna ? GO:0000027 ... P0AG51 32820061
    44 6vz7:f (7.0) BS02 rna ? GO:0000027 ... P0AG51 32820061
    45 6vz7:g (7.0) BS01 rna ? GO:0002181 ... P0A7M9 32820061
    46 6vz7:h (7.0) BS01 rna ? GO:0000027 ... P60422 32820061
    47 6vz7:i (7.0) BS01 rna ? GO:0000027 ... P0A7N4 32820061
    48 6vz7:j (7.0) BS01 rna ? GO:0000027 ... P60438 32820061
    49 6vz7:k (7.0) BS01 rna ? GO:0000027 ... P0A7N9 32820061
    50 6vz7:l (7.0) BS01 rna ? GO:0001070 ... P60723 32820061
    51 6vz7:m (7.0) BS01 rna ? GO:0002181 ... P0A7P5 32820061
    52 6vz7:n (7.0) BS01 rna ? GO:0000027 ... P62399 32820061
    53 6vz7:n (7.0) BS02 rna ? GO:0000027 ... P62399 32820061
    54 6vz7:o (7.0) BS01 rna ? GO:0002181 ... P0A7Q1 32820061
    55 6vz7:p (7.0) BS01 rna ? GO:0000027 ... P0AG55 32820061
    56 6vz7:q (7.0) BS01 rna ? GO:0002181 ... P0A7Q6 32820061
    57 6vz7:r (7.0) BS01 rna ? GO:0002181 ... P0A7R1 32820061
    58 6vz7:s (7.0) BS01 rna ? GO:0002181 ... P0AA10 32820061
    59 6vz7:t (7.0) BS01 rna ? GO:0002181 ... P0ADY3 32820061
    60 6vz7:t (7.0) BS02 rna ? GO:0002181 ... P0ADY3 32820061
    61 6vz7:u (7.0) BS01 rna ? GO:0002181 ... P02413 32820061
    62 6vz7:v (7.0) BS01 rna ? GO:0000027 ... P0ADY7 32820061
    63 6vz7:v (7.0) BS02 rna ? GO:0000027 ... P0ADY7 32820061
    64 6vz7:w (7.0) BS01 rna ? GO:0000027 ... P0AG44 32820061
    65 6vz7:x (7.0) BS01 rna ? GO:0002181 ... P0C018 32820061
    66 6vz7:x (7.0) BS02 rna ? GO:0002181 ... P0C018 32820061
    67 6vz7:y (7.0) BS01 rna ? GO:0000027 ... P0A7K6 32820061
    68 6vz7:z (7.0) BS01 rna ? GO:0000027 ... P0A7L3 32820061
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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