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BioLiP
Download all results in tab-seperated text for 55 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 6v3a:0 (2.82) BS01 rna ? GO:0003735 ... N/A 31964740
    2 6v3a:1 (2.82) BS01 rna ? GO:0003735 ... N9DYI8 31964740
    3 6v3a:2 (2.82) BS01 rna ? GO:0003735 ... B7I693 31964740
    4 6v3a:3 (2.82) BS01 rna ? GO:0003735 ... A0A1Y3CHB1 31964740
    5 6v3a:C (2.82) BS01 rna ? GO:0002181 ... B7IA36 31964740
    6 6v3a:D (2.82) BS01 rna ? GO:0003735 ... B7IA39 31964740
    7 6v3a:E (2.82) BS01 rna ? GO:0003735 ... B7IA38 31964740
    8 6v3a:F (2.82) BS01 rna ? GO:0000049 ... B7IA27 31964740
    9 6v3a:F (2.82) BS02 rna ? GO:0000049 ... B7IA27 31964740
    10 6v3a:G (2.82) BS01 rna ? GO:0002181 ... B7IA24 31964740
    11 6v3a:H (2.82) BS01 rna ? GO:0003735 ... B7IBC3 31964740
    12 6v3a:I (2.82) BS01 rna ? GO:0003729 ... B7I9B0 31964740
    13 6v3a:J (2.82) BS01 rna ? GO:0003735 ... N9NZ44 31964740
    14 6v3a:J (2.82) BS02 rna ? GO:0003735 ... N9NZ44 31964740
    15 6v3a:K (2.82) BS01 rna ? GO:0003735 ... B7IA20 31964740
    16 6v3a:L (2.82) BS01 rna ? GO:0000049 ... B7IA32 31964740
    17 6v3a:L (2.82) BS02 rna ? GO:0000049 ... B7IA32 31964740
    18 6v3a:M (2.82) BS01 rna ? GO:0003735 ... B7IA13 31964740
    19 6v3a:N (2.82) BS01 rna ? GO:0003735 ... B7IA23 31964740
    20 6v3a:N (2.82) BS02 rna ? GO:0003735 ... B7IA23 31964740
    21 6v3a:O (2.82) BS01 rna ? GO:0003735 ... B7IAS9 31964740
    22 6v3a:O (2.82) BS02 rna ? GO:0003735 ... B7IAS9 31964740
    23 6v3a:P (2.82) BS01 rna ? GO:0000027 ... V5VGC9 31964740
    24 6v3a:Q (2.82) BS01 rna ? GO:0003723 ... B7I6V9 31964740
    25 6v3a:R (2.82) BS01 rna ? GO:0003735 ... A0A009QSN8 31964740
    26 6v3a:S (2.82) BS01 rna ? GO:0000027 ... B7IA37 31964740
    27 6v3a:T (2.82) BS01 rna ? GO:0003723 ... B7IA28 31964740
    28 6v3a:U (2.82) BS01 rna ? GO:0003723 ... B7I7B6 31964740
    29 6v3a:V (2.82) BS01 rna ? GO:0003735 ... B7I6V8 31964740
    30 6v3a:W (2.82) BS01 rna ? GO:0003735 ... S3NQR5 31964740
    31 6v3a:X (2.82) BS01 rna ? GO:0003735 ... B7IA31 31964740
    32 6v3a:Y (2.82) BS01 rna ? GO:0003735 ... N8V730 31964740
    33 6v3a:Z (2.82) BS01 rna ? GO:0003735 ... B7I7A4 31964740
    34 6v3a:b (2.82) BS01 rna ? GO:0003735 ... V5VBC2 31964740
    35 6v3a:c (2.82) BS01 rna ? GO:0003676 ... V5V9N0 31964740
    36 6v3a:d (2.82) BS01 rna ? GO:0003723 ... B7IA15 31964740
    37 6v3a:e (2.82) BS01 rna ? GO:0003723 ... B7IA22 31964740
    38 6v3a:f (2.82) BS01 rna ? GO:0003735 ... B7IBC1 31964740
    39 6v3a:g (2.82) BS01 rna ? GO:0000028 ... B7I7S0 31964740
    40 6v3a:h (2.82) BS01 rna ? GO:0003735 ... B7IA25 31964740
    41 6v3a:i (2.82) BS01 rna ? GO:0003723 ... V5VBA5 31964740
    42 6v3a:j (2.82) BS01 rna N/A GO:0003723 ... N/A 31964740
    43 6v3a:k (2.82) BS01 rna ? GO:0003735 ... A0A062C259 31964740
    44 6v3a:k (2.82) BS02 peptide ? GO:0003735 ... A0A062C259 31964740
    45 6v3a:l (2.82) BS01 rna ? GO:0000049 ... B7I7R9 31964740
    46 6v3a:m (2.82) BS01 rna ? GO:0000049 ... B7IA17 31964740
    47 6v3a:n (2.82) BS01 rna ? GO:0003735 ... B7IA26 31964740
    48 6v3a:o (2.82) BS01 rna ? GO:0003735 ... B7I3U0 31964740
    49 6v3a:o (2.82) BS02 rna ? GO:0003735 ... B7I3U0 31964740
    50 6v3a:p (2.82) BS01 rna ? GO:0003735 ... A0A1V3DIZ9 31964740
    51 6v3a:q (2.82) BS01 rna ? GO:0003735 ... B7IA30 31964740
    52 6v3a:r (2.82) BS01 rna ? GO:0003735 ... A0A150HZL5 31964740
    53 6v3a:s (2.82) BS01 rna ? GO:0000028 ... B7IA35 31964740
    54 6v3a:s (2.82) BS02 rna ? GO:0000028 ... B7IA35 31964740
    55 6v3a:t (2.82) BS01 rna ? GO:0003723 ... B7I5N9 31964740
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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