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BioLiP
Download all results in tab-seperated text for 128 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 6tra:A (2.85) BS01 CL0 1.97.1.12 GO:0000287 ... P0A405 N/A
    2 6tra:A (2.85) BS02 CLA 1.97.1.12 GO:0000287 ... P0A405 N/A
    3 6tra:A (2.85) BS03 CLA 1.97.1.12 GO:0000287 ... P0A405 N/A
    4 6tra:A (2.85) BS04 CLA 1.97.1.12 GO:0000287 ... P0A405 N/A
    5 6tra:A (2.85) BS05 CLA 1.97.1.12 GO:0000287 ... P0A405 N/A
    6 6tra:A (2.85) BS06 CLA 1.97.1.12 GO:0000287 ... P0A405 N/A
    7 6tra:A (2.85) BS07 CLA 1.97.1.12 GO:0000287 ... P0A405 N/A
    8 6tra:A (2.85) BS08 CLA 1.97.1.12 GO:0000287 ... P0A405 N/A
    9 6tra:A (2.85) BS09 CLA 1.97.1.12 GO:0000287 ... P0A405 N/A
    10 6tra:A (2.85) BS10 CLA 1.97.1.12 GO:0000287 ... P0A405 N/A
    11 6tra:A (2.85) BS11 CLA 1.97.1.12 GO:0000287 ... P0A405 N/A
    12 6tra:A (2.85) BS12 CLA 1.97.1.12 GO:0000287 ... P0A405 N/A
    13 6tra:A (2.85) BS13 CLA 1.97.1.12 GO:0000287 ... P0A405 N/A
    14 6tra:A (2.85) BS14 CLA 1.97.1.12 GO:0000287 ... P0A405 N/A
    15 6tra:A (2.85) BS15 CLA 1.97.1.12 GO:0000287 ... P0A405 N/A
    16 6tra:A (2.85) BS16 CLA 1.97.1.12 GO:0000287 ... P0A405 N/A
    17 6tra:A (2.85) BS17 CLA 1.97.1.12 GO:0000287 ... P0A405 N/A
    18 6tra:A (2.85) BS18 CLA 1.97.1.12 GO:0000287 ... P0A405 N/A
    19 6tra:A (2.85) BS19 CLA 1.97.1.12 GO:0000287 ... P0A405 N/A
    20 6tra:A (2.85) BS20 CLA 1.97.1.12 GO:0000287 ... P0A405 N/A
    21 6tra:A (2.85) BS21 CLA 1.97.1.12 GO:0000287 ... P0A405 N/A
    22 6tra:A (2.85) BS22 CLA 1.97.1.12 GO:0000287 ... P0A405 N/A
    23 6tra:A (2.85) BS23 CLA 1.97.1.12 GO:0000287 ... P0A405 N/A
    24 6tra:A (2.85) BS24 CLA 1.97.1.12 GO:0000287 ... P0A405 N/A
    25 6tra:A (2.85) BS25 CLA 1.97.1.12 GO:0000287 ... P0A405 N/A
    26 6tra:A (2.85) BS26 CLA 1.97.1.12 GO:0000287 ... P0A405 N/A
    27 6tra:A (2.85) BS27 CLA 1.97.1.12 GO:0000287 ... P0A405 N/A
    28 6tra:A (2.85) BS28 CLA 1.97.1.12 GO:0000287 ... P0A405 N/A
    29 6tra:A (2.85) BS29 CLA 1.97.1.12 GO:0000287 ... P0A405 N/A
    30 6tra:A (2.85) BS30 CLA 1.97.1.12 GO:0000287 ... P0A405 N/A
    31 6tra:A (2.85) BS31 CLA 1.97.1.12 GO:0000287 ... P0A405 N/A
    32 6tra:A (2.85) BS32 CLA 1.97.1.12 GO:0000287 ... P0A405 N/A
    33 6tra:A (2.85) BS33 CLA 1.97.1.12 GO:0000287 ... P0A405 N/A
    34 6tra:A (2.85) BS34 CLA 1.97.1.12 GO:0000287 ... P0A405 N/A
    35 6tra:A (2.85) BS35 CLA 1.97.1.12 GO:0000287 ... P0A405 N/A
    36 6tra:A (2.85) BS36 CLA 1.97.1.12 GO:0000287 ... P0A405 N/A
    37 6tra:A (2.85) BS37 CLA 1.97.1.12 GO:0000287 ... P0A405 N/A
    38 6tra:A (2.85) BS38 CLA 1.97.1.12 GO:0000287 ... P0A405 N/A
    39 6tra:A (2.85) BS39 CLA 1.97.1.12 GO:0000287 ... P0A405 N/A
    40 6tra:A (2.85) BS40 CLA 1.97.1.12 GO:0000287 ... P0A405 N/A
    41 6tra:A (2.85) BS41 CLA 1.97.1.12 GO:0000287 ... P0A405 N/A
    42 6tra:A (2.85) BS42 CLA 1.97.1.12 GO:0000287 ... P0A405 N/A
    43 6tra:A (2.85) BS43 CLA 1.97.1.12 GO:0000287 ... P0A405 N/A
    44 6tra:A (2.85) BS44 PQN 1.97.1.12 GO:0000287 ... P0A405 N/A
    45 6tra:A (2.85) BS45 CLA 1.97.1.12 GO:0000287 ... P0A405 N/A
    46 6tra:A (2.85) BS46 SF4 1.97.1.12 GO:0000287 ... P0A405 N/A
    47 6tra:A (2.85) BS47 CLA 1.97.1.12 GO:0000287 ... P0A405 N/A
    48 6tra:A (2.85) BS48 CLA 1.97.1.12 GO:0000287 ... P0A405 N/A
    49 6tra:A (2.85) BS49 CLA 1.97.1.12 GO:0000287 ... P0A405 N/A
    50 6tra:A (2.85) BS50 CLA 1.97.1.12 GO:0000287 ... P0A405 N/A
    51 6tra:B (2.85) BS01 peptide 1.97.1.12 GO:0000287 ... P0A407 N/A
    52 6tra:B (2.85) BS02 CLA 1.97.1.12 GO:0000287 ... P0A407 N/A
    53 6tra:B (2.85) BS03 CLA 1.97.1.12 GO:0000287 ... P0A407 N/A
    54 6tra:B (2.85) BS04 CLA 1.97.1.12 GO:0000287 ... P0A407 N/A
    55 6tra:B (2.85) BS05 CLA 1.97.1.12 GO:0000287 ... P0A407 N/A
    56 6tra:B (2.85) BS06 CLA 1.97.1.12 GO:0000287 ... P0A407 N/A
    57 6tra:B (2.85) BS07 CLA 1.97.1.12 GO:0000287 ... P0A407 N/A
    58 6tra:B (2.85) BS08 SF4 1.97.1.12 GO:0000287 ... P0A407 N/A
    59 6tra:B (2.85) BS09 CA 1.97.1.12 GO:0000287 ... P0A407 N/A
    60 6tra:B (2.85) BS10 CLA 1.97.1.12 GO:0000287 ... P0A407 N/A
    61 6tra:B (2.85) BS11 CLA 1.97.1.12 GO:0000287 ... P0A407 N/A
    62 6tra:B (2.85) BS12 CLA 1.97.1.12 GO:0000287 ... P0A407 N/A
    63 6tra:B (2.85) BS13 CLA 1.97.1.12 GO:0000287 ... P0A407 N/A
    64 6tra:B (2.85) BS14 CLA 1.97.1.12 GO:0000287 ... P0A407 N/A
    65 6tra:B (2.85) BS15 CLA 1.97.1.12 GO:0000287 ... P0A407 N/A
    66 6tra:B (2.85) BS16 CLA 1.97.1.12 GO:0000287 ... P0A407 N/A
    67 6tra:B (2.85) BS17 CLA 1.97.1.12 GO:0000287 ... P0A407 N/A
    68 6tra:B (2.85) BS18 CLA 1.97.1.12 GO:0000287 ... P0A407 N/A
    69 6tra:B (2.85) BS19 CLA 1.97.1.12 GO:0000287 ... P0A407 N/A
    70 6tra:B (2.85) BS20 CLA 1.97.1.12 GO:0000287 ... P0A407 N/A
    71 6tra:B (2.85) BS21 CLA 1.97.1.12 GO:0000287 ... P0A407 N/A
    72 6tra:B (2.85) BS22 CLA 1.97.1.12 GO:0000287 ... P0A407 N/A
    73 6tra:B (2.85) BS23 CLA 1.97.1.12 GO:0000287 ... P0A407 N/A
    74 6tra:B (2.85) BS24 CLA 1.97.1.12 GO:0000287 ... P0A407 N/A
    75 6tra:B (2.85) BS25 CLA 1.97.1.12 GO:0000287 ... P0A407 N/A
    76 6tra:B (2.85) BS26 CLA 1.97.1.12 GO:0000287 ... P0A407 N/A
    77 6tra:B (2.85) BS27 CLA 1.97.1.12 GO:0000287 ... P0A407 N/A
    78 6tra:B (2.85) BS28 CLA 1.97.1.12 GO:0000287 ... P0A407 N/A
    79 6tra:B (2.85) BS29 CLA 1.97.1.12 GO:0000287 ... P0A407 N/A
    80 6tra:B (2.85) BS30 CLA 1.97.1.12 GO:0000287 ... P0A407 N/A
    81 6tra:B (2.85) BS31 CLA 1.97.1.12 GO:0000287 ... P0A407 N/A
    82 6tra:B (2.85) BS32 CLA 1.97.1.12 GO:0000287 ... P0A407 N/A
    83 6tra:B (2.85) BS33 CLA 1.97.1.12 GO:0000287 ... P0A407 N/A
    84 6tra:B (2.85) BS34 CLA 1.97.1.12 GO:0000287 ... P0A407 N/A
    85 6tra:B (2.85) BS35 CLA 1.97.1.12 GO:0000287 ... P0A407 N/A
    86 6tra:B (2.85) BS36 CLA 1.97.1.12 GO:0000287 ... P0A407 N/A
    87 6tra:B (2.85) BS37 CLA 1.97.1.12 GO:0000287 ... P0A407 N/A
    88 6tra:B (2.85) BS38 CLA 1.97.1.12 GO:0000287 ... P0A407 N/A
    89 6tra:B (2.85) BS39 CLA 1.97.1.12 GO:0000287 ... P0A407 N/A
    90 6tra:B (2.85) BS40 CLA 1.97.1.12 GO:0000287 ... P0A407 N/A
    91 6tra:B (2.85) BS41 CLA 1.97.1.12 GO:0000287 ... P0A407 N/A
    92 6tra:B (2.85) BS42 CLA 1.97.1.12 GO:0000287 ... P0A407 N/A
    93 6tra:B (2.85) BS43 CLA 1.97.1.12 GO:0000287 ... P0A407 N/A
    94 6tra:B (2.85) BS44 CLA 1.97.1.12 GO:0000287 ... P0A407 N/A
    95 6tra:B (2.85) BS45 CLA 1.97.1.12 GO:0000287 ... P0A407 N/A
    96 6tra:B (2.85) BS46 CLA 1.97.1.12 GO:0000287 ... P0A407 N/A
    97 6tra:B (2.85) BS47 CLA 1.97.1.12 GO:0000287 ... P0A407 N/A
    98 6tra:B (2.85) BS48 PQN 1.97.1.12 GO:0000287 ... P0A407 N/A
    99 6tra:C (2.85) BS01 SF4 1.97.1.12 GO:0009055 ... P0A415 N/A
    100 6tra:C (2.85) BS02 SF4 1.97.1.12 GO:0009055 ... P0A415 N/A
    101 6tra:F (2.85) BS01 peptide ? GO:0009522 ... P0A401 N/A
    102 6tra:F (2.85) BS02 CLA ? GO:0009522 ... P0A401 N/A
    103 6tra:F (2.85) BS03 CLA ? GO:0009522 ... P0A401 N/A
    104 6tra:F (2.85) BS04 CLA ? GO:0009522 ... P0A401 N/A
    105 6tra:F (2.85) BS05 CLA ? GO:0009522 ... P0A401 N/A
    106 6tra:F (2.85) BS06 CLA ? GO:0009522 ... P0A401 N/A
    107 6tra:F (2.85) BS07 CLA ? GO:0009522 ... P0A401 N/A
    108 6tra:I (2.85) BS01 CLA ? GO:0009522 ... P0A427 N/A
    109 6tra:I (2.85) BS02 CLA ? GO:0009522 ... P0A427 N/A
    110 6tra:I (2.85) BS03 CLA ? GO:0009522 ... P0A427 N/A
    111 6tra:J (2.85) BS01 CLA ? GO:0009522 ... P0A429 N/A
    112 6tra:J (2.85) BS02 CLA ? GO:0009522 ... P0A429 N/A
    113 6tra:J (2.85) BS03 CLA ? GO:0009522 ... P0A429 N/A
    114 6tra:J (2.85) BS04 CLA ? GO:0009522 ... P0A429 N/A
    115 6tra:K (2.85) BS01 CLA ? GO:0009522 ... P0A425 N/A
    116 6tra:K (2.85) BS02 CLA ? GO:0009522 ... P0A425 N/A
    117 6tra:K (2.85) BS03 CLA ? GO:0009522 ... P0A425 N/A
    118 6tra:K (2.85) BS04 CLA ? GO:0009522 ... P0A425 N/A
    119 6tra:L (2.85) BS01 CLA ? GO:0009522 ... Q8DGB4 N/A
    120 6tra:L (2.85) BS02 CLA ? GO:0009522 ... Q8DGB4 N/A
    121 6tra:L (2.85) BS03 CLA ? GO:0009522 ... Q8DGB4 N/A
    122 6tra:L (2.85) BS04 CLA ? GO:0009522 ... Q8DGB4 N/A
    123 6tra:L (2.85) BS05 CA ? GO:0009522 ... Q8DGB4 N/A
    124 6tra:L (2.85) BS06 CLA ? GO:0009522 ... Q8DGB4 N/A
    125 6tra:L (2.85) BS07 CLA ? GO:0009522 ... Q8DGB4 N/A
    126 6tra:L (2.85) BS08 CLA ? GO:0009522 ... Q8DGB4 N/A
    127 6tra:M (2.85) BS01 CLA ? GO:0009522 ... P0A403 N/A
    128 6tra:M (2.85) BS02 CLA ? GO:0009522 ... P0A403 N/A
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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