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BioLiP
Download all results in tab-seperated text for 22 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 6swd:0 (3.2) BS01 rna ? GO:0005840 ... Q8U232 32029867
    2 6swd:6 (3.2) BS01 rna ? GO:0003723 ... Q9V138 32029867
    3 6swd:6 (3.2) BS02 rna ? GO:0003723 ... Q9V138 32029867
    4 6swd:A (3.2) BS01 rna ? GO:0003735 ... Q9V2K7 32029867
    5 6swd:B (3.2) BS01 rna ? GO:0000028 ... Q9V191 32029867
    6 6swd:C (3.2) BS01 ZN ? N/A G8ZFK7 32029867
    7 6swd:C (3.2) BS02 ZN ? N/A G8ZFK7 32029867
    8 6swd:D (3.2) BS01 rna ? GO:0003723 ... P61992 32029867
    9 6swd:E (3.2) BS01 rna ? GO:0003723 ... Q9V1U8 32029867
    10 6swd:F (3.2) BS01 rna ? GO:0003723 ... Q9V1V5 32029867
    11 6swd:F (3.2) BS02 ZN ? GO:0003723 ... Q9V1V5 32029867
    12 6swd:G (3.2) BS01 rna ? GO:0003735 ... Q9UYS3 32029867
    13 6swd:I (3.2) BS01 rna ? GO:0003735 ... Q9V1V0 32029867
    14 6swd:J (3.2) BS01 rna ? GO:0000462 ... Q9UZL4 32029867
    15 6swd:M (3.2) BS01 rna ? GO:0003735 ... P62010 32029867
    16 6swd:N (3.2) BS01 rna ? GO:0003735 ... P61994 32029867
    17 6swd:Q (3.2) BS01 rna ? GO:0003735 ... Q9V2K9 32029867
    18 6swd:R (3.2) BS01 rna ? GO:0003735 ... Q9V1U5 32029867
    19 6swd:R (3.2) BS02 ZN ? GO:0003735 ... Q9V1U5 32029867
    20 6swd:V (3.2) BS01 rna ? GO:0003735 ... Q9UY20 32029867
    21 6swd:W (3.2) BS01 rna ? GO:0000028 ... Q9UXZ3 32029867
    22 6swd:W (3.2) BS02 ZN ? GO:0000028 ... Q9UXZ3 32029867

    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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