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BioLiP
Download all results in tab-seperated text for 54 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 6spg:2 (3.34) BS01 rna ? GO:0003735 ... A0A069QB25 31611393
    2 6spg:3 (3.34) BS01 rna ? GO:0003735 ... A0A140SG33 31611393
    3 6spg:4 (3.34) BS01 rna ? GO:0003735 ... A0A087L9L7 31611393
    4 6spg:5 (3.34) BS01 rna ? GO:0003735 ... A0A069QC44 31611393
    5 6spg:6 (3.34) BS01 rna ? GO:0003735 ... E2RXU2 31611393
    6 6spg:C (3.34) BS01 rna ? GO:0002181 ... A0A241XHA2 31611393
    7 6spg:D (3.34) BS01 rna ? GO:0003735 ... A0A072ZBZ2 31611393
    8 6spg:E (3.34) BS01 rna ? GO:0003735 ... A0A241XH26 31611393
    9 6spg:F (3.34) BS01 rna ? GO:0000049 ... A0A072ZMU2 31611393
    10 6spg:F (3.34) BS02 rna ? GO:0000049 ... A0A072ZMU2 31611393
    11 6spg:G (3.34) BS01 rna ? GO:0002181 ... A0A2V3F3S9 31611393
    12 6spg:H (3.34) BS01 rna ? GO:0003735 ... A0A072ZKF0 31611393
    13 6spg:I (3.34) BS01 rna ? GO:0003735 ... A0A2V3GYK0 31611393
    14 6spg:J (3.34) BS01 rna ? GO:0003729 ... A0A071L356 31611393
    15 6spg:K (3.34) BS01 rna ? GO:0003735 ... E2RXT6 31611393
    16 6spg:K (3.34) BS02 rna ? GO:0003735 ... E2RXT6 31611393
    17 6spg:L (3.34) BS01 rna ? GO:0003735 ... A0A2V3D5Z8 31611393
    18 6spg:M (3.34) BS01 rna ? GO:0000049 ... A0A069QEB6 31611393
    19 6spg:N (3.34) BS01 rna ? GO:0003735 ... A0A072ZCA1 31611393
    20 6spg:O (3.34) BS01 rna ? GO:0003735 ... E2RXU0 31611393
    21 6spg:O (3.34) BS02 rna ? GO:0003735 ... E2RXU0 31611393
    22 6spg:P (3.34) BS01 rna ? GO:0003735 ... A0A263PZC6 31611393
    23 6spg:P (3.34) BS02 rna ? GO:0003735 ... A0A263PZC6 31611393
    24 6spg:P (3.34) BS03 MG ? GO:0003735 ... A0A263PZC6 31611393
    25 6spg:Q (3.34) BS01 rna ? GO:0000027 ... A0A069QEE3 31611393
    26 6spg:R (3.34) BS01 rna ? GO:0003723 ... A0A072ZDZ0 31611393
    27 6spg:S (3.34) BS01 rna N/A GO:0003735 ... N/A 31611393
    28 6spg:T (3.34) BS01 rna ? GO:0000027 ... E2RXT1 31611393
    29 6spg:U (3.34) BS01 rna ? GO:0003723 ... E2RXT7 31611393
    30 6spg:V (3.34) BS01 rna ? GO:0003723 ... A0A072ZBM5 31611393
    31 6spg:W (3.34) BS01 rna ? GO:0003735 ... A0A071LFT4 31611393
    32 6spg:X (3.34) BS01 rna ? GO:0003735 ... A0A072ZIQ9 31611393
    33 6spg:Y (3.34) BS01 rna N/A GO:0003735 ... N/A 31611393
    34 6spg:Z (3.34) BS01 rna ? GO:0003735 ... E2RXU1 31611393
    35 6spg:b (3.34) BS01 rna ? GO:0003735 ... A0A072ZPV8 31611393
    36 6spg:c (3.34) BS01 rna ? GO:0003676 ... A0A140S919 31611393
    37 6spg:d (3.34) BS01 rna ? GO:0003723 ... A0A072ZDF7 31611393
    38 6spg:e (3.34) BS01 rna ? GO:0003723 ... A0A241XG65 31611393
    39 6spg:f (3.34) BS01 rna ? GO:0003735 ... A0A069Q263 31611393
    40 6spg:g (3.34) BS01 rna ? GO:0000028 ... A0A2V3F2U6 31611393
    41 6spg:h (3.34) BS01 rna ? GO:0003735 ... E2RXT9 31611393
    42 6spg:i (3.34) BS01 rna ? GO:0003723 ... A0A069PXX1 31611393
    43 6spg:j (3.34) BS01 rna ? GO:0000049 ... E2RXT0 31611393
    44 6spg:k (3.34) BS01 rna ? GO:0003735 ... E2RXU4 31611393
    45 6spg:l (3.34) BS01 rna ? GO:0000049 ... A0A071L394 31611393
    46 6spg:m (3.34) BS01 rna ? GO:0000049 ... E2RXU3 31611393
    47 6spg:n (3.34) BS01 rna ? GO:0003735 ... E2RXT8 31611393
    48 6spg:o (3.34) BS01 rna ? GO:0003735 ... A0A071L3R7 31611393
    49 6spg:p (3.34) BS01 rna ? GO:0003735 ... A0A2V4FRZ2 31611393
    50 6spg:q (3.34) BS01 rna ? GO:0003735 ... E2RXT5 31611393
    51 6spg:r (3.34) BS01 rna ? GO:0003735 ... A0A2V3DLV3 31611393
    52 6spg:s (3.34) BS01 rna ? GO:0003723 ... E2RXT2 31611393
    53 6spg:t (3.34) BS01 rna ? GO:0003723 ... A0A072ZDZ9 31611393
    54 6spg:u (3.34) BS01 rna ? GO:0003735 ... A0A069QC99 31611393
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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