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BioLiP
Download all results in tab-seperated text for 70 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 6rzz:B (3.2) BS01 rna ? GO:0002181 ... P0CX45 31115337
    2 6rzz:C (3.2) BS01 rna ? GO:0000027 ... P14126 31115337
    3 6rzz:D (3.2) BS01 rna ? GO:0002181 ... P10664 31115337
    4 6rzz:D (3.2) BS02 rna ? GO:0002181 ... P10664 31115337
    5 6rzz:E (3.2) BS01 rna ? GO:0000027 ... P0C0W9 31115337
    6 6rzz:E (3.2) BS02 rna ? GO:0000027 ... P0C0W9 31115337
    7 6rzz:F (3.2) BS01 rna ? GO:0002181 ... P05738 31115337
    8 6rzz:G (3.2) BS01 rna ? GO:0000027 ... Q02326 31115337
    9 6rzz:H (3.2) BS01 rna ? GO:0000470 ... P17076 31115337
    10 6rzz:H (3.2) BS02 rna ? GO:0000470 ... P17076 31115337
    11 6rzz:J (3.2) BS01 rna ? GO:0000470 ... P26785 31115337
    12 6rzz:K (3.2) BS01 rna ? GO:0002181 ... Q12690 31115337
    13 6rzz:K (3.2) BS02 rna ? GO:0002181 ... Q12690 31115337
    14 6rzz:L (3.2) BS01 rna ? GO:0002181 ... P0CX41 31115337
    15 6rzz:M (3.2) BS01 rna ? GO:0000027 ... P36105 31115337
    16 6rzz:N (3.2) BS01 rna ? GO:0002181 ... P02406 31115337
    17 6rzz:O (3.2) BS01 rna ? GO:0002181 ... P05748 31115337
    18 6rzz:O (3.2) BS02 rna ? GO:0002181 ... P05748 31115337
    19 6rzz:P (3.2) BS01 rna ? GO:0000027 ... P26321 31115337
    20 6rzz:P (3.2) BS02 rna ? GO:0000027 ... P26321 31115337
    21 6rzz:Q (3.2) BS01 rna ? GO:0002181 ... P0CX49 31115337
    22 6rzz:R (3.2) BS01 rna ? GO:0002181 ... P0CX82 31115337
    23 6rzz:S (3.2) BS01 rna ? GO:0002181 ... P0CX23 31115337
    24 6rzz:S (3.2) BS02 rna ? GO:0002181 ... P0CX23 31115337
    25 6rzz:T (3.2) BS01 rna ? GO:0002181 ... Q02753 31115337
    26 6rzz:T (3.2) BS02 rna ? GO:0002181 ... Q02753 31115337
    27 6rzz:U (3.2) BS01 rna ? GO:0000448 ... P05740 31115337
    28 6rzz:U (3.2) BS02 rna ? GO:0000448 ... P05740 31115337
    29 6rzz:V (3.2) BS01 rna ? GO:0002181 ... P05749 31115337
    30 6rzz:W (3.2) BS01 rna ? GO:0000027 ... P04456 31115337
    31 6rzz:W (3.2) BS02 rna ? GO:0000027 ... P04456 31115337
    32 6rzz:X (3.2) BS01 rna ? GO:0002181 ... P05743 31115337
    33 6rzz:X (3.2) BS02 rna ? GO:0002181 ... P05743 31115337
    34 6rzz:Y (3.2) BS01 rna ? GO:0002181 ... P0C2H6 31115337
    35 6rzz:Z (3.2) BS01 rna ? GO:0000463 ... P0CX84 31115337
    36 6rzz:Z (3.2) BS02 rna ? GO:0000463 ... P0CX84 31115337
    37 6rzz:a (3.2) BS01 rna ? GO:0002181 ... P05747 31115337
    38 6rzz:b (3.2) BS01 rna ? GO:0000463 ... P05737 31115337
    39 6rzz:b (3.2) BS02 rna ? GO:0000463 ... P05737 31115337
    40 6rzz:c (3.2) BS01 rna ? GO:0002181 ... P14120 31115337
    41 6rzz:d (3.2) BS01 rna ? GO:0002181 ... P0C2H8 31115337
    42 6rzz:e (3.2) BS01 rna ? GO:0002181 ... P38061 31115337
    43 6rzz:f (3.2) BS01 rna ? GO:0000027 ... P05744 31115337
    44 6rzz:g (3.2) BS01 rna ? GO:0002181 ... P87262 31115337
    45 6rzz:g (3.2) BS02 ZN ? GO:0002181 ... P87262 31115337
    46 6rzz:h (3.2) BS01 rna ? GO:0002181 ... P05745 31115337
    47 6rzz:i (3.2) BS01 rna ? GO:0000448 ... P49166 31115337
    48 6rzz:i (3.2) BS02 rna ? GO:0000448 ... P49166 31115337
    49 6rzz:i (3.2) BS03 ZN ? GO:0000448 ... P49166 31115337
    50 6rzz:j (3.2) BS01 rna ? GO:0002181 ... P49167 31115337
    51 6rzz:k (3.2) BS01 rna ? GO:0002181 ... P04650 31115337
    52 6rzz:k (3.2) BS02 rna ? GO:0002181 ... P04650 31115337
    53 6rzz:l (3.2) BS01 rna ? GO:0002181 ... P0CX27 31115337
    54 6rzz:l (3.2) BS02 ZN ? GO:0002181 ... P0CX27 31115337
    55 6rzz:m (3.2) BS01 rna ? GO:0002181 ... P0CX25 31115337
    56 6rzz:m (3.2) BS02 ZN ? GO:0002181 ... P0CX25 31115337
    57 6rzz:n (3.2) BS01 rna ? GO:0000054 ... Q12522 31115337
    58 6rzz:o (3.2) BS01 rna 3.6.1.- GO:0000027 ... P53145 31115337
    59 6rzz:p (3.2) BS01 rna N/A N/A N/A 31115337
    60 6rzz:r (3.2) BS01 rna 3.-.-.- GO:0000055 ... Q03862 31115337
    61 6rzz:r (3.2) BS02 rna 3.-.-.- GO:0000055 ... Q03862 31115337
    62 6rzz:s (3.2) BS01 rna 3.1.3.48 GO:0000027 ... Q02256 31115337
    63 6rzz:s (3.2) BS02 ZN 3.1.3.48 GO:0000027 ... Q02256 31115337
    64 6rzz:u (3.2) BS01 rna ? GO:0000278 ... P38344 31115337
    65 6rzz:u (3.2) BS02 ZN ? GO:0000278 ... P38344 31115337
    66 6rzz:u (3.2) BS03 ZN ? GO:0000278 ... P38344 31115337
    67 6rzz:v (3.2) BS01 rna ? GO:0002181 ... P04449 31115337
    68 6rzz:w (3.2) BS01 rna ? GO:0000055 ... P38861 31115337
    69 6rzz:w (3.2) BS02 ZN ? GO:0000055 ... P38861 31115337
    70 6rzz:w (3.2) BS03 ZN ? GO:0000055 ... P38861 31115337
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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