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BioLiP
Download all results in tab-seperated text for 21 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 6ryr:A (3.1) BS01 dna ? GO:0000786 ... P84233 32543371
    2 6ryr:A (3.1) BS02 dna ? GO:0000786 ... P84233 32543371
    3 6ryr:B (3.1) BS01 dna ? GO:0000786 ... P62799 32543371
    4 6ryr:B (3.1) BS02 dna ? GO:0000786 ... P62799 32543371
    5 6ryr:C (3.1) BS01 dna ? GO:0000786 ... P06897 32543371
    6 6ryr:C (3.1) BS02 dna ? GO:0000786 ... P06897 32543371
    7 6ryr:D (3.1) BS01 dna ? GO:0000786 ... P02281 32543371
    8 6ryr:D (3.1) BS02 dna ? GO:0000786 ... P02281 32543371
    9 6ryr:E (3.1) BS01 dna ? GO:0000786 ... P84233 32543371
    10 6ryr:E (3.1) BS02 dna ? GO:0000786 ... P84233 32543371
    11 6ryr:F (3.1) BS01 dna ? GO:0000786 ... P62799 32543371
    12 6ryr:F (3.1) BS02 dna ? GO:0000786 ... P62799 32543371
    13 6ryr:G (3.1) BS01 dna ? GO:0000786 ... P06897 32543371
    14 6ryr:G (3.1) BS02 dna ? GO:0000786 ... P06897 32543371
    15 6ryr:H (3.1) BS01 dna ? GO:0000786 ... P02281 32543371
    16 6ryr:H (3.1) BS02 dna ? GO:0000786 ... P02281 32543371
    17 6ryr:W (3.1) BS01 dna 3.6.4.12 GO:0003677 ... Q14839 32543371
    18 6ryr:W (3.1) BS02 dna 3.6.4.12 GO:0003677 ... Q14839 32543371
    19 6ryr:W (3.1) BS03 ANP 3.6.4.12 GO:0003677 ... Q14839 32543371
    20 6ryr:W (3.1) BS04 ZN 3.6.4.12 GO:0003677 ... Q14839 32543371
    21 6ryr:W (3.1) BS05 ZN 3.6.4.12 GO:0003677 ... Q14839 32543371
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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