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BioLiP
Download all results in tab-seperated text for 108 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 6r6p:0 (3.1) BS01 rna ? GO:0003735 ... G1SK22 31246176
    2 6r6p:6 (3.1) BS01 rna ? GO:0001891 ... G1SJB4 31246176
    3 6r6p:9 (3.1) BS01 rna ? GO:0003723 ... G1U0Q2 31246176
    4 6r6p:A (3.1) BS01 rna ? GO:0002181 ... G1TT27 31246176
    5 6r6p:A (3.1) BS02 rna ? GO:0002181 ... G1TT27 31246176
    6 6r6p:AA (3.1) BS01 rna ? GO:0003735 ... G1T8A2 31246176
    7 6r6p:B (3.1) BS01 rna ? GO:0003723 ... G1TL06 31246176
    8 6r6p:BB (3.1) BS01 rna ? GO:0000028 ... G1TFM5 31246176
    9 6r6p:C (3.1) BS01 rna ? GO:0003735 ... G1SVW5 31246176
    10 6r6p:C (3.1) BS02 rna ? GO:0003735 ... G1SVW5 31246176
    11 6r6p:C (3.1) BS03 peptide ? GO:0003735 ... G1SVW5 31246176
    12 6r6p:CC (3.1) BS01 rna ? GO:0000462 ... G1TJW1 31246176
    13 6r6p:CC (3.1) BS02 rna ? GO:0000462 ... G1TJW1 31246176
    14 6r6p:D (3.1) BS01 rna ? GO:0000027 ... P19949 31246176
    15 6r6p:D (3.1) BS02 rna ? GO:0000027 ... P19949 31246176
    16 6r6p:DD (3.1) BS01 rna 4.2.99.18 GO:0003677 ... G1TNM3 31246176
    17 6r6p:E (3.1) BS01 rna ? GO:0003735 ... G1TG04 31246176
    18 6r6p:EE (3.1) BS01 rna ? GO:0003735 ... G1TRM4 31246176
    19 6r6p:F (3.1) BS01 rna ? GO:0000463 ... G1SV32 31246176
    20 6r6p:F (3.1) BS02 rna ? GO:0000463 ... G1SV32 31246176
    21 6r6p:FF (3.1) BS01 rna ? GO:0000028 ... G1TIB4 31246176
    22 6r6p:G (3.1) BS01 rna ? GO:0042254 ... G1STW0 31246176
    23 6r6p:G (3.1) BS02 rna ? GO:0042254 ... G1STW0 31246176
    24 6r6p:GG (3.1) BS01 rna N/A GO:0003723 ... N/A 31246176
    25 6r6p:H (3.1) BS01 rna ? GO:0002181 ... G1SWI6 31246176
    26 6r6p:I (3.1) BS01 rna ? GO:0000027 ... B7NZQ2 31246176
    27 6r6p:I (3.1) BS02 rna ? GO:0000027 ... B7NZQ2 31246176
    28 6r6p:I (3.1) BS03 rna ? GO:0000027 ... B7NZQ2 31246176
    29 6r6p:II (3.1) BS01 rna ? GO:0003676 ... G1TPG3 31246176
    30 6r6p:J (3.1) BS01 rna ? GO:0003723 ... G1TUB8 31246176
    31 6r6p:J (3.1) BS02 rna ? GO:0003723 ... G1TUB8 31246176
    32 6r6p:JJ (3.1) BS01 rna ? GO:0000028 ... G1TZ76 31246176
    33 6r6p:L (3.1) BS01 rna N/A GO:0003735 ... N/A 31246176
    34 6r6p:L (3.1) BS02 rna N/A GO:0003735 ... N/A 31246176
    35 6r6p:M (3.1) BS01 rna ? GO:0003723 ... G1SZ12 31246176
    36 6r6p:MM (3.1) BS01 rna N/A GO:0003735 ... N/A 31246176
    37 6r6p:N (3.1) BS01 rna ? GO:0002181 ... G1T0C1 31246176
    38 6r6p:N (3.1) BS02 rna ? GO:0002181 ... G1T0C1 31246176
    39 6r6p:NN (3.1) BS01 rna N/A GO:0003735 ... N/A 31246176
    40 6r6p:O (3.1) BS01 rna N/A GO:0003735 ... N/A 31246176
    41 6r6p:OO (3.1) BS01 rna ? N/A G1TDB3 31246176
    42 6r6p:P (3.1) BS01 rna ? GO:0003735 ... G1SCJ6 31246176
    43 6r6p:P (3.1) BS02 rna ? GO:0003735 ... G1SCJ6 31246176
    44 6r6p:P (3.1) BS03 peptide ? GO:0003735 ... G1SCJ6 31246176
    45 6r6p:PP (3.1) BS01 rna ? GO:0000028 ... G1TN62 31246176
    46 6r6p:Q (3.1) BS01 rna ? GO:0003723 ... G1TX70 31246176
    47 6r6p:QQ (3.1) BS01 rna ? GO:0003735 ... G1SP51 31246176
    48 6r6p:QQ (3.1) BS02 rna ? GO:0003735 ... G1SP51 31246176
    49 6r6p:R (3.1) BS01 rna N/A GO:0003723 ... N/A 31246176
    50 6r6p:R (3.1) BS02 rna N/A GO:0003723 ... N/A 31246176
    51 6r6p:RR (3.1) BS01 rna ? GO:0003735 ... G1SFR8 31246176
    52 6r6p:S (3.1) BS01 rna N/A GO:0003735 ... N/A 31246176
    53 6r6p:S (3.1) BS02 rna N/A GO:0003735 ... N/A 31246176
    54 6r6p:SS (3.1) BS01 rna ? N/A G1TPV3 31246176
    55 6r6p:T (3.1) BS01 rna ? GO:0003735 ... G1SHQ2 31246176
    56 6r6p:T (3.1) BS02 rna ? GO:0003735 ... G1SHQ2 31246176
    57 6r6p:TT (3.1) BS01 rna ? GO:0003735 ... G1TG89 31246176
    58 6r6p:U (3.1) BS01 rna ? GO:0003735 ... G1TSG1 31246176
    59 6r6p:UU (3.1) BS01 rna ? GO:0000462 ... G1SGX4 31246176
    60 6r6p:V (3.1) BS01 rna ? GO:0000122 ... G1T6D1 31246176
    61 6r6p:V (3.1) BS02 rna ? GO:0000122 ... G1T6D1 31246176
    62 6r6p:VV (3.1) BS01 rna ? GO:0003735 ... G1SZ47 31246176
    63 6r6p:W (3.1) BS01 rna ? N/A G1SE28 31246176
    64 6r6p:X (3.1) BS01 rna ? GO:0003735 ... G1SE76 31246176
    65 6r6p:X (3.1) BS02 rna ? GO:0003735 ... G1SE76 31246176
    66 6r6p:XX (3.1) BS01 rna ? GO:0003723 ... B7NZS8 31246176
    67 6r6p:Y (3.1) BS01 rna ? GO:0002181 ... G1SQH0 31246176
    68 6r6p:Y (3.1) BS02 rna ? GO:0002181 ... G1SQH0 31246176
    69 6r6p:YY (3.1) BS01 rna ? GO:0003735 ... G1TU13 31246176
    70 6r6p:Z (3.1) BS01 rna ? GO:0003735 ... G1TXF6 31246176
    71 6r6p:ZZ (3.1) BS01 rna N/A GO:0003735 ... N/A 31246176
    72 6r6p:a (3.1) BS01 rna ? GO:0003735 ... G1SNY0 31246176
    73 6r6p:b (3.1) BS01 rna ? GO:0003735 ... G1SGR6 31246176
    74 6r6p:c (3.1) BS01 rna N/A GO:0003723 ... N/A 31246176
    75 6r6p:d (3.1) BS01 rna ? GO:0003735 ... G1SHG0 31246176
    76 6r6p:e (3.1) BS01 rna ? GO:0003735 ... G1TUN8 31246176
    77 6r6p:f (3.1) BS01 rna ? GO:0000049 ... G1SF08 31246176
    78 6r6p:g (3.1) BS01 rna ? GO:0003735 ... G1TXG5 31246176
    79 6r6p:g (3.1) BS02 ZN ? GO:0003735 ... G1TXG5 31246176
    80 6r6p:g (3.1) BS03 MG ? GO:0003735 ... G1TXG5 31246176
    81 6r6p:h (3.1) BS01 rna ? GO:0000463 ... G1SIT5 31246176
    82 6r6p:h (3.1) BS02 rna ? GO:0000463 ... G1SIT5 31246176
    83 6r6p:i (3.1) BS01 rna ? GO:0002181 ... G1TTQ5 31246176
    84 6r6p:j (3.1) BS01 rna ? GO:0003735 ... U3KPD5 31246176
    85 6r6p:j (3.1) BS02 rna ? GO:0003735 ... U3KPD5 31246176
    86 6r6p:j (3.1) BS03 ZN ? GO:0003735 ... U3KPD5 31246176
    87 6r6p:k (3.1) BS01 rna N/A GO:0003735 ... N/A 31246176
    88 6r6p:l (3.1) BS01 rna ? GO:0003735 ... G1SYU7 31246176
    89 6r6p:l (3.1) BS02 rna ? GO:0003735 ... G1SYU7 31246176
    90 6r6p:m (3.1) BS01 rna N/A GO:0003735 ... N/A 31246176
    91 6r6p:m (3.1) BS02 ZN N/A GO:0003735 ... N/A 31246176
    92 6r6p:o (3.1) BS01 rna ? GO:0003735 ... G1T040 31246176
    93 6r6p:o (3.1) BS02 rna ? GO:0003735 ... G1T040 31246176
    94 6r6p:o (3.1) BS03 ZN ? GO:0003735 ... G1T040 31246176
    95 6r6p:p (3.1) BS01 rna ? GO:0003735 ... G1SY53 31246176
    96 6r6p:p (3.1) BS02 rna ? GO:0003735 ... G1SY53 31246176
    97 6r6p:p (3.1) BS03 ZN ? GO:0003735 ... G1SY53 31246176
    98 6r6p:q (3.1) BS01 rna N/A GO:0003735 ... N/A 31246176
    99 6r6p:r (3.1) BS01 rna ? GO:0003735 ... G1U7L1 31246176
    100 6r6p:s (3.1) BS01 rna N/A N/A N/A 31246176
    101 6r6p:t (3.1) BS01 rna ? GO:0003723 ... G1SMR7 31246176
    102 6r6p:u (3.1) BS01 rna ? GO:0003735 ... G1SS70 31246176
    103 6r6p:u (3.1) BS02 rna ? GO:0003735 ... G1SS70 31246176
    104 6r6p:v (3.1) BS01 rna N/A GO:0003723 ... N/A 31246176
    105 6r6p:w (3.1) BS01 rna ? GO:0003735 ... G1U7M4 31246176
    106 6r6p:x (3.1) BS01 rna ? GO:0003723 ... G1TK17 31246176
    107 6r6p:y (3.1) BS01 rna ? GO:0003735 ... G1SVB0 31246176
    108 6r6p:z (3.1) BS01 rna ? GO:0000082 ... G1TM55 31246176
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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