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BioLiP
Download all results in tab-seperated text for 139 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 6nsh:QB (3.397) BS01 rna ? GO:0003735 ... P80371 33016876
    2 6nsh:QC (3.397) BS01 rna ? GO:0003676 ... P80372 33016876
    3 6nsh:QD (3.397) BS01 rna ? GO:0003723 ... P80373 33016876
    4 6nsh:QD (3.397) BS02 SF4 ? GO:0003723 ... P80373 33016876
    5 6nsh:QE (3.397) BS01 rna ? GO:0003723 ... Q5SHQ5 33016876
    6 6nsh:QF (3.397) BS01 rna ? GO:0003735 ... Q5SLP8 33016876
    7 6nsh:QF (3.397) BS02 MG ? GO:0003735 ... Q5SLP8 33016876
    8 6nsh:QG (3.397) BS01 rna ? GO:0000028 ... P17291 33016876
    9 6nsh:QH (3.397) BS01 rna ? GO:0003735 ... P0DOY9 33016876
    10 6nsh:QI (3.397) BS01 rna ? GO:0000049 ... P80374 33016876
    11 6nsh:QI (3.397) BS02 rna ? GO:0000049 ... P80374 33016876
    12 6nsh:QJ (3.397) BS01 rna ? GO:0000049 ... Q5SHN7 33016876
    13 6nsh:QK (3.397) BS01 rna ? GO:0003735 ... P80376 33016876
    14 6nsh:QL (3.397) BS01 rna ? GO:0000049 ... Q5SHN3 33016876
    15 6nsh:QM (3.397) BS01 rna ? GO:0000049 ... P80377 33016876
    16 6nsh:QN (3.397) BS01 rna ? GO:0003735 ... P0DOY6 33016876
    17 6nsh:QN (3.397) BS02 ZN ? GO:0003735 ... P0DOY6 33016876
    18 6nsh:QO (3.397) BS01 rna ? GO:0003735 ... Q5SJ76 33016876
    19 6nsh:QO (3.397) BS02 rna ? GO:0003735 ... Q5SJ76 33016876
    20 6nsh:QP (3.397) BS01 rna ? GO:0003735 ... Q5SJH3 33016876
    21 6nsh:QQ (3.397) BS01 rna ? GO:0003735 ... P0DOY7 33016876
    22 6nsh:QR (3.397) BS01 rna ? GO:0003735 ... Q5SLQ0 33016876
    23 6nsh:QS (3.397) BS01 rna ? GO:0000028 ... Q5SHP2 33016876
    24 6nsh:QT (3.397) BS01 rna ? GO:0003723 ... P80380 33016876
    25 6nsh:R0 (3.397) BS01 rna ? GO:0003735 ... P60493 33016876
    26 6nsh:R0 (3.397) BS02 rna ? GO:0003735 ... P60493 33016876
    27 6nsh:R1 (3.397) BS01 rna ? GO:0003735 ... P60494 33016876
    28 6nsh:R2 (3.397) BS01 rna ? GO:0003735 ... Q5SHP6 33016876
    29 6nsh:R3 (3.397) BS01 rna ? GO:0003735 ... Q5SHQ6 33016876
    30 6nsh:R3 (3.397) BS02 rna ? GO:0003735 ... Q5SHQ6 33016876
    31 6nsh:R4 (3.397) BS01 rna ? GO:0003735 ... Q5SJE1 33016876
    32 6nsh:R4 (3.397) BS02 ZN ? GO:0003735 ... Q5SJE1 33016876
    33 6nsh:R5 (3.397) BS01 rna ? GO:0003735 ... P80339 33016876
    34 6nsh:R5 (3.397) BS02 ZN ? GO:0003735 ... P80339 33016876
    35 6nsh:R6 (3.397) BS01 rna ? GO:0000049 ... P35871 33016876
    36 6nsh:R6 (3.397) BS02 ZN ? GO:0000049 ... P35871 33016876
    37 6nsh:R7 (3.397) BS01 rna ? GO:0003735 ... P80340 33016876
    38 6nsh:R8 (3.397) BS01 rna ? GO:0003735 ... Q5SKU1 33016876
    39 6nsh:R9 (3.397) BS01 rna ? GO:0003735 ... Q5SHR2 33016876
    40 6nsh:R9 (3.397) BS02 ZN ? GO:0003735 ... Q5SHR2 33016876
    41 6nsh:RD (3.397) BS01 rna ? GO:0002181 ... P60405 33016876
    42 6nsh:RD (3.397) BS02 rna ? GO:0002181 ... P60405 33016876
    43 6nsh:RE (3.397) BS01 rna ? GO:0003735 ... Q5SHN8 33016876
    44 6nsh:RF (3.397) BS01 rna ? GO:0003735 ... Q5SHN9 33016876
    45 6nsh:RG (3.397) BS01 rna ? GO:0000049 ... Q5SHQ0 33016876
    46 6nsh:RG (3.397) BS02 rna ? GO:0000049 ... Q5SHQ0 33016876
    47 6nsh:RH (3.397) BS01 rna ? GO:0002181 ... P0DOY8 33016876
    48 6nsh:RI (3.397) BS01 rna ? GO:0003735 ... Q5SLQ1 33016876
    49 6nsh:RN (3.397) BS01 rna ? GO:0003729 ... P60488 33016876
    50 6nsh:RO (3.397) BS01 rna ? GO:0003735 ... Q5SHP8 33016876
    51 6nsh:RO (3.397) BS02 rna ? GO:0003735 ... Q5SHP8 33016876
    52 6nsh:RP (3.397) BS01 rna ? GO:0003735 ... Q5SHQ7 33016876
    53 6nsh:RQ (3.397) BS01 rna ? GO:0000049 ... P60489 33016876
    54 6nsh:RQ (3.397) BS02 rna ? GO:0000049 ... P60489 33016876
    55 6nsh:RQ (3.397) BS03 MG ? GO:0000049 ... P60489 33016876
    56 6nsh:RR (3.397) BS01 rna ? GO:0003735 ... Q9Z9H5 33016876
    57 6nsh:RS (3.397) BS01 rna ? GO:0003735 ... Q5SHQ4 33016876
    58 6nsh:RS (3.397) BS02 rna ? GO:0003735 ... Q5SHQ4 33016876
    59 6nsh:RT (3.397) BS01 rna ? GO:0003735 ... P60490 33016876
    60 6nsh:RT (3.397) BS02 rna ? GO:0003735 ... P60490 33016876
    61 6nsh:RU (3.397) BS01 rna ? GO:0000027 ... P60491 33016876
    62 6nsh:RV (3.397) BS01 rna ? GO:0003723 ... P60492 33016876
    63 6nsh:RW (3.397) BS01 rna ? GO:0003735 ... Q5SHP3 33016876
    64 6nsh:RX (3.397) BS01 rna ? GO:0000027 ... Q5SHP0 33016876
    65 6nsh:RY (3.397) BS01 rna ? GO:0003723 ... Q5SHP9 33016876
    66 6nsh:RY (3.397) BS02 ZN ? GO:0003723 ... Q5SHP9 33016876
    67 6nsh:RZ (3.397) BS01 rna ? GO:0003723 ... Q5SHZ1 33016876
    68 6nsh:RZ (3.397) BS02 rna ? GO:0003723 ... Q5SHZ1 33016876
    69 6nsh:XB (3.397) BS01 rna ? GO:0003735 ... P80371 33016876
    70 6nsh:XC (3.397) BS01 rna ? GO:0003676 ... P80372 33016876
    71 6nsh:XD (3.397) BS01 rna ? GO:0003723 ... P80373 33016876
    72 6nsh:XD (3.397) BS02 SF4 ? GO:0003723 ... P80373 33016876
    73 6nsh:XE (3.397) BS01 rna ? GO:0003723 ... Q5SHQ5 33016876
    74 6nsh:XF (3.397) BS01 rna ? GO:0003735 ... Q5SLP8 33016876
    75 6nsh:XG (3.397) BS01 rna ? GO:0000028 ... P17291 33016876
    76 6nsh:XG (3.397) BS02 rna ? GO:0000028 ... P17291 33016876
    77 6nsh:XH (3.397) BS01 rna ? GO:0003735 ... P0DOY9 33016876
    78 6nsh:XI (3.397) BS01 rna ? GO:0000049 ... P80374 33016876
    79 6nsh:XJ (3.397) BS01 rna ? GO:0000049 ... Q5SHN7 33016876
    80 6nsh:XK (3.397) BS01 rna ? GO:0003735 ... P80376 33016876
    81 6nsh:XK (3.397) BS02 MG ? GO:0003735 ... P80376 33016876
    82 6nsh:XL (3.397) BS01 rna ? GO:0000049 ... Q5SHN3 33016876
    83 6nsh:XM (3.397) BS01 rna ? GO:0000049 ... P80377 33016876
    84 6nsh:XM (3.397) BS02 MG ? GO:0000049 ... P80377 33016876
    85 6nsh:XN (3.397) BS01 rna ? GO:0003735 ... P0DOY6 33016876
    86 6nsh:XN (3.397) BS02 ZN ? GO:0003735 ... P0DOY6 33016876
    87 6nsh:XO (3.397) BS01 rna ? GO:0003735 ... Q5SJ76 33016876
    88 6nsh:XO (3.397) BS02 rna ? GO:0003735 ... Q5SJ76 33016876
    89 6nsh:XP (3.397) BS01 rna ? GO:0003735 ... Q5SJH3 33016876
    90 6nsh:XQ (3.397) BS01 rna ? GO:0003735 ... P0DOY7 33016876
    91 6nsh:XQ (3.397) BS02 MG ? GO:0003735 ... P0DOY7 33016876
    92 6nsh:XR (3.397) BS01 rna ? GO:0003735 ... Q5SLQ0 33016876
    93 6nsh:XS (3.397) BS01 rna ? GO:0000028 ... Q5SHP2 33016876
    94 6nsh:XT (3.397) BS01 rna ? GO:0003723 ... P80380 33016876
    95 6nsh:Y0 (3.397) BS01 rna ? GO:0003735 ... P60493 33016876
    96 6nsh:Y0 (3.397) BS02 rna ? GO:0003735 ... P60493 33016876
    97 6nsh:Y1 (3.397) BS01 rna ? GO:0003735 ... P60494 33016876
    98 6nsh:Y2 (3.397) BS01 rna ? GO:0003735 ... Q5SHP6 33016876
    99 6nsh:Y3 (3.397) BS01 rna ? GO:0003735 ... Q5SHQ6 33016876
    100 6nsh:Y3 (3.397) BS02 rna ? GO:0003735 ... Q5SHQ6 33016876
    101 6nsh:Y4 (3.397) BS01 rna ? GO:0003735 ... Q5SJE1 33016876
    102 6nsh:Y4 (3.397) BS02 ZN ? GO:0003735 ... Q5SJE1 33016876
    103 6nsh:Y5 (3.397) BS01 rna ? GO:0003735 ... P80339 33016876
    104 6nsh:Y5 (3.397) BS02 ZN ? GO:0003735 ... P80339 33016876
    105 6nsh:Y6 (3.397) BS01 rna ? GO:0000049 ... P35871 33016876
    106 6nsh:Y6 (3.397) BS02 ZN ? GO:0000049 ... P35871 33016876
    107 6nsh:Y7 (3.397) BS01 rna ? GO:0003735 ... P80340 33016876
    108 6nsh:Y8 (3.397) BS01 rna ? GO:0003735 ... Q5SKU1 33016876
    109 6nsh:Y9 (3.397) BS01 rna ? GO:0003735 ... Q5SHR2 33016876
    110 6nsh:Y9 (3.397) BS02 ZN ? GO:0003735 ... Q5SHR2 33016876
    111 6nsh:YD (3.397) BS01 rna ? GO:0002181 ... P60405 33016876
    112 6nsh:YD (3.397) BS02 MG ? GO:0002181 ... P60405 33016876
    113 6nsh:YE (3.397) BS01 rna ? GO:0003735 ... Q5SHN8 33016876
    114 6nsh:YF (3.397) BS01 rna ? GO:0003735 ... Q5SHN9 33016876
    115 6nsh:YG (3.397) BS01 rna ? GO:0000049 ... Q5SHQ0 33016876
    116 6nsh:YG (3.397) BS02 rna ? GO:0000049 ... Q5SHQ0 33016876
    117 6nsh:YH (3.397) BS01 rna ? GO:0002181 ... P0DOY8 33016876
    118 6nsh:YI (3.397) BS01 rna ? GO:0003735 ... Q5SLQ1 33016876
    119 6nsh:YI (3.397) BS02 rna ? GO:0003735 ... Q5SLQ1 33016876
    120 6nsh:YN (3.397) BS01 rna ? GO:0003729 ... P60488 33016876
    121 6nsh:YO (3.397) BS01 rna ? GO:0003735 ... Q5SHP8 33016876
    122 6nsh:YO (3.397) BS02 rna ? GO:0003735 ... Q5SHP8 33016876
    123 6nsh:YP (3.397) BS01 rna ? GO:0003735 ... Q5SHQ7 33016876
    124 6nsh:YQ (3.397) BS01 rna ? GO:0000049 ... P60489 33016876
    125 6nsh:YQ (3.397) BS02 rna ? GO:0000049 ... P60489 33016876
    126 6nsh:YQ (3.397) BS03 MG ? GO:0000049 ... P60489 33016876
    127 6nsh:YR (3.397) BS01 rna ? GO:0003735 ... Q9Z9H5 33016876
    128 6nsh:YS (3.397) BS01 rna ? GO:0003735 ... Q5SHQ4 33016876
    129 6nsh:YS (3.397) BS02 rna ? GO:0003735 ... Q5SHQ4 33016876
    130 6nsh:YT (3.397) BS01 rna ? GO:0003735 ... P60490 33016876
    131 6nsh:YT (3.397) BS02 rna ? GO:0003735 ... P60490 33016876
    132 6nsh:YU (3.397) BS01 rna ? GO:0000027 ... P60491 33016876
    133 6nsh:YV (3.397) BS01 rna ? GO:0003723 ... P60492 33016876
    134 6nsh:YW (3.397) BS01 rna ? GO:0003735 ... Q5SHP3 33016876
    135 6nsh:YX (3.397) BS01 rna ? GO:0000027 ... Q5SHP0 33016876
    136 6nsh:YY (3.397) BS01 rna ? GO:0003723 ... Q5SHP9 33016876
    137 6nsh:YY (3.397) BS02 ZN ? GO:0003723 ... Q5SHP9 33016876
    138 6nsh:YZ (3.397) BS01 rna ? GO:0003723 ... Q5SHZ1 33016876
    139 6nsh:YZ (3.397) BS02 rna ? GO:0003723 ... Q5SHZ1 33016876
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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