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BioLiP
Download all results in tab-seperated text for 70 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 6lqt:3C (4.9) BS01 rna 2.1.1.- GO:0000451 ... P15646 32943522
    2 6lqt:3D (4.9) BS01 rna ? GO:0000154 ... Q12460 32943522
    3 6lqt:3D (4.9) BS02 rna ? GO:0000154 ... Q12460 32943522
    4 6lqt:3E (4.9) BS01 rna ? GO:0000447 ... Q12499 32943522
    5 6lqt:3E (4.9) BS02 rna ? GO:0000447 ... Q12499 32943522
    6 6lqt:3F (4.9) BS01 rna ? GO:0000447 ... Q06506 32943522
    7 6lqt:3G (4.9) BS01 rna ? GO:0000245 ... P39990 32943522
    8 6lqt:3H (4.9) BS01 rna ? GO:0000245 ... P39990 32943522
    9 6lqt:5C (4.9) BS01 rna ? GO:0000447 ... P40055 32943522
    10 6lqt:5C (4.9) BS02 rna ? GO:0000447 ... P40055 32943522
    11 6lqt:5C (4.9) BS03 rna ? GO:0000447 ... P40055 32943522
    12 6lqt:5D (4.9) BS01 rna ? GO:0000447 ... P34247 32943522
    13 6lqt:5D (4.9) BS02 rna ? GO:0000447 ... P34247 32943522
    14 6lqt:5E (4.9) BS01 rna ? GO:0000447 ... P47083 32943522
    15 6lqt:5F (4.9) BS01 rna ? GO:0003723 ... P32899 32943522
    16 6lqt:5G (4.9) BS01 rna ? GO:0005515 ... P53941 32943522
    17 6lqt:5H (4.9) BS01 rna ? GO:0000447 ... Q12136 32943522
    18 6lqt:5H (4.9) BS02 rna ? GO:0000447 ... Q12136 32943522
    19 6lqt:5I (4.9) BS01 rna ? GO:0000462 ... P33750 32943522
    20 6lqt:5I (4.9) BS02 rna ? GO:0000462 ... P33750 32943522
    21 6lqt:5J (4.9) BS01 rna ? GO:0000447 ... Q12035 32943522
    22 6lqt:5J (4.9) BS02 rna ? GO:0000447 ... Q12035 32943522
    23 6lqt:5K (4.9) BS01 rna ? GO:0000447 ... Q05498 32943522
    24 6lqt:5K (4.9) BS02 ZN ? GO:0000447 ... Q05498 32943522
    25 6lqt:A4 (4.9) BS01 rna ? GO:0000462 ... Q06679 32943522
    26 6lqt:A9 (4.9) BS01 rna ? GO:0000049 ... P38882 32943522
    27 6lqt:AE (4.9) BS01 rna ? GO:0000447 ... P42945 32943522
    28 6lqt:AF (4.9) BS01 rna ? GO:0000462 ... Q04305 32943522
    29 6lqt:AF (4.9) BS02 rna ? GO:0000462 ... Q04305 32943522
    30 6lqt:AG (4.9) BS01 rna ? GO:0000462 ... Q02931 32943522
    31 6lqt:AG (4.9) BS02 rna ? GO:0000462 ... Q02931 32943522
    32 6lqt:B1 (4.9) BS01 rna ? GO:0000028 ... P25635 32943522
    33 6lqt:B1 (4.9) BS02 rna ? GO:0000028 ... P25635 32943522
    34 6lqt:B1 (4.9) BS03 rna ? GO:0000028 ... P25635 32943522
    35 6lqt:B2 (4.9) BS01 rna ? GO:0000447 ... Q12220 32943522
    36 6lqt:B3 (4.9) BS01 rna ? GO:0000447 ... Q05946 32943522
    37 6lqt:B6 (4.9) BS01 rna ? GO:0000447 ... Q02354 32943522
    38 6lqt:B8 (4.9) BS01 rna ? GO:0000292 ... P40362 32943522
    39 6lqt:BE (4.9) BS01 rna ? GO:0003674 ... Q06078 32943522
    40 6lqt:BE (4.9) BS02 rna ? GO:0003674 ... Q06078 32943522
    41 6lqt:RE (4.9) BS01 rna ? GO:0000028 ... P53254 32943522
    42 6lqt:RF (4.9) BS01 rna ? GO:0000028 ... P25368 32943522
    43 6lqt:RH (4.9) BS01 rna 2.1.1.260 GO:0000447 ... Q06287 32943522
    44 6lqt:RJ (4.9) BS01 rna ? GO:0000462 ... Q08965 32943522
    45 6lqt:RJ (4.9) BS02 rna ? GO:0000462 ... Q08965 32943522
    46 6lqt:RJ (4.9) BS03 GTP ? GO:0000462 ... Q08965 32943522
    47 6lqt:RJ (4.9) BS04 MG ? GO:0000462 ... Q08965 32943522
    48 6lqt:RK (4.9) BS01 rna ? GO:0000447 ... Q08096 32943522
    49 6lqt:RN (4.9) BS01 rna ? GO:0000028 ... Q99207 32943522
    50 6lqt:RN (4.9) BS02 rna ? GO:0000028 ... Q99207 32943522
    51 6lqt:RP (4.9) BS01 rna ? GO:0000447 ... P35194 32943522
    52 6lqt:RQ (4.9) BS01 rna ? GO:0000447 ... Q04500 32943522
    53 6lqt:RQ (4.9) BS02 rna ? GO:0000447 ... Q04500 32943522
    54 6lqt:RT (4.9) BS01 rna N/A GO:0003723 ... N/A 32943522
    55 6lqt:SC (4.9) BS01 rna ? GO:0000462 ... P33442 32943522
    56 6lqt:SF (4.9) BS01 rna ? GO:0002181 ... P0CX35 32943522
    57 6lqt:SG (4.9) BS01 rna ? GO:0000028 ... P26783 32943522
    58 6lqt:SH (4.9) BS01 rna ? GO:0000462 ... P0CX37 32943522
    59 6lqt:SI (4.9) BS01 rna ? GO:0002181 ... P26786 32943522
    60 6lqt:SJ (4.9) BS01 rna ? GO:0000462 ... P0CX39 32943522
    61 6lqt:SK (4.9) BS01 rna ? GO:0000462 ... O13516 32943522
    62 6lqt:SM (4.9) BS01 rna ? GO:0000028 ... P0CX47 32943522
    63 6lqt:SO (4.9) BS01 rna ? GO:0000462 ... P05756 32943522
    64 6lqt:SP (4.9) BS01 rna ? GO:0000028 ... P06367 32943522
    65 6lqt:SR (4.9) BS01 rna ? GO:0000462 ... P0CX51 32943522
    66 6lqt:SX (4.9) BS01 rna ? GO:0002181 ... Q3E7Y3 32943522
    67 6lqt:SY (4.9) BS01 rna ? GO:0000462 ... P0CX29 32943522
    68 6lqt:SZ (4.9) BS01 rna ? GO:0000462 ... P0CX31 32943522
    69 6lqt:Sc (4.9) BS01 rna ? GO:0000028 ... P35997 32943522
    70 6lqt:Sd (4.9) BS01 rna ? GO:0000028 ... Q3E7X9 32943522
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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