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BioLiP
Download all results in tab-seperated text for 74 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 6lqs:3C (3.8) BS01 rna 2.1.1.- GO:0000451 ... P15646 32943522
    2 6lqs:3D (3.8) BS01 rna ? GO:0000154 ... Q12460 32943522
    3 6lqs:3D (3.8) BS02 rna ? GO:0000154 ... Q12460 32943522
    4 6lqs:3E (3.8) BS01 rna ? GO:0000447 ... Q12499 32943522
    5 6lqs:3E (3.8) BS02 rna ? GO:0000447 ... Q12499 32943522
    6 6lqs:3F (3.8) BS01 rna ? GO:0000447 ... Q06506 32943522
    7 6lqs:3G (3.8) BS01 rna ? GO:0000245 ... P39990 32943522
    8 6lqs:3H (3.8) BS01 rna ? GO:0000245 ... P39990 32943522
    9 6lqs:5C (3.8) BS01 rna ? GO:0000447 ... P40055 32943522
    10 6lqs:5C (3.8) BS02 rna ? GO:0000447 ... P40055 32943522
    11 6lqs:5C (3.8) BS03 rna ? GO:0000447 ... P40055 32943522
    12 6lqs:5D (3.8) BS01 rna ? GO:0000447 ... P34247 32943522
    13 6lqs:5D (3.8) BS02 rna ? GO:0000447 ... P34247 32943522
    14 6lqs:5E (3.8) BS01 rna ? GO:0000447 ... P47083 32943522
    15 6lqs:5F (3.8) BS01 rna ? GO:0003723 ... P32899 32943522
    16 6lqs:5G (3.8) BS01 rna ? GO:0005515 ... P53941 32943522
    17 6lqs:5H (3.8) BS01 rna ? GO:0000447 ... Q12136 32943522
    18 6lqs:5H (3.8) BS02 rna ? GO:0000447 ... Q12136 32943522
    19 6lqs:5I (3.8) BS01 rna ? GO:0000462 ... P33750 32943522
    20 6lqs:5I (3.8) BS02 rna ? GO:0000462 ... P33750 32943522
    21 6lqs:5J (3.8) BS01 rna ? GO:0000447 ... Q12035 32943522
    22 6lqs:5J (3.8) BS02 rna ? GO:0000447 ... Q12035 32943522
    23 6lqs:5K (3.8) BS01 rna ? GO:0000447 ... Q05498 32943522
    24 6lqs:5K (3.8) BS02 ZN ? GO:0000447 ... Q05498 32943522
    25 6lqs:A4 (3.8) BS01 rna ? GO:0000462 ... Q06679 32943522
    26 6lqs:A9 (3.8) BS01 rna ? GO:0000049 ... P38882 32943522
    27 6lqs:AE (3.8) BS01 rna ? GO:0000447 ... P42945 32943522
    28 6lqs:AE (3.8) BS02 rna ? GO:0000447 ... P42945 32943522
    29 6lqs:AF (3.8) BS01 rna ? GO:0000462 ... Q04305 32943522
    30 6lqs:AF (3.8) BS02 rna ? GO:0000462 ... Q04305 32943522
    31 6lqs:AG (3.8) BS01 rna ? GO:0000462 ... Q02931 32943522
    32 6lqs:AG (3.8) BS02 rna ? GO:0000462 ... Q02931 32943522
    33 6lqs:B1 (3.8) BS01 rna ? GO:0000028 ... P25635 32943522
    34 6lqs:B1 (3.8) BS02 rna ? GO:0000028 ... P25635 32943522
    35 6lqs:B1 (3.8) BS03 rna ? GO:0000028 ... P25635 32943522
    36 6lqs:B2 (3.8) BS01 rna ? GO:0000447 ... Q12220 32943522
    37 6lqs:B3 (3.8) BS01 rna ? GO:0000447 ... Q05946 32943522
    38 6lqs:B6 (3.8) BS01 rna ? GO:0000447 ... Q02354 32943522
    39 6lqs:B8 (3.8) BS01 rna ? GO:0000292 ... P40362 32943522
    40 6lqs:BE (3.8) BS01 rna ? GO:0003674 ... Q06078 32943522
    41 6lqs:BE (3.8) BS02 rna ? GO:0003674 ... Q06078 32943522
    42 6lqs:RE (3.8) BS01 rna ? GO:0000028 ... P53254 32943522
    43 6lqs:RF (3.8) BS01 rna ? GO:0000028 ... P25368 32943522
    44 6lqs:RG (3.8) BS01 rna 2.1.1.260 GO:0000447 ... Q06287 32943522
    45 6lqs:RH (3.8) BS01 rna 2.1.1.260 GO:0000447 ... Q06287 32943522
    46 6lqs:RJ (3.8) BS01 rna ? GO:0000462 ... Q08965 32943522
    47 6lqs:RJ (3.8) BS02 rna ? GO:0000462 ... Q08965 32943522
    48 6lqs:RJ (3.8) BS03 GTP ? GO:0000462 ... Q08965 32943522
    49 6lqs:RJ (3.8) BS04 MG ? GO:0000462 ... Q08965 32943522
    50 6lqs:RK (3.8) BS01 rna ? GO:0000447 ... Q08096 32943522
    51 6lqs:RN (3.8) BS01 rna ? GO:0000028 ... Q99207 32943522
    52 6lqs:RN (3.8) BS02 rna ? GO:0000028 ... Q99207 32943522
    53 6lqs:RP (3.8) BS01 rna ? GO:0000447 ... P35194 32943522
    54 6lqs:RQ (3.8) BS01 rna ? GO:0000447 ... Q04500 32943522
    55 6lqs:RQ (3.8) BS02 rna ? GO:0000447 ... Q04500 32943522
    56 6lqs:RS (3.8) BS01 rna ? GO:0000447 ... P38333 32943522
    57 6lqs:RT (3.8) BS01 rna N/A GO:0003723 ... N/A 32943522
    58 6lqs:RW (3.8) BS01 rna ? GO:0003674 ... P40470 32943522
    59 6lqs:SC (3.8) BS01 rna ? GO:0000462 ... P33442 32943522
    60 6lqs:SF (3.8) BS01 rna ? GO:0002181 ... P0CX35 32943522
    61 6lqs:SG (3.8) BS01 rna ? GO:0000028 ... P26783 32943522
    62 6lqs:SH (3.8) BS01 rna ? GO:0000462 ... P0CX37 32943522
    63 6lqs:SI (3.8) BS01 rna ? GO:0002181 ... P26786 32943522
    64 6lqs:SJ (3.8) BS01 rna ? GO:0000462 ... P0CX39 32943522
    65 6lqs:SK (3.8) BS01 rna ? GO:0000462 ... O13516 32943522
    66 6lqs:SM (3.8) BS01 rna ? GO:0000028 ... P0CX47 32943522
    67 6lqs:SO (3.8) BS01 rna ? GO:0000462 ... P05756 32943522
    68 6lqs:SP (3.8) BS01 rna ? GO:0000028 ... P06367 32943522
    69 6lqs:SR (3.8) BS01 rna ? GO:0000462 ... P0CX51 32943522
    70 6lqs:SX (3.8) BS01 rna ? GO:0002181 ... Q3E7Y3 32943522
    71 6lqs:SY (3.8) BS01 rna ? GO:0000462 ... P0CX29 32943522
    72 6lqs:SZ (3.8) BS01 rna ? GO:0000462 ... P0CX31 32943522
    73 6lqs:Sc (3.8) BS01 rna ? GO:0000028 ... P35997 32943522
    74 6lqs:Sd (3.8) BS01 rna ? GO:0000028 ... Q3E7X9 32943522
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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