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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
Download all results in tab-seperated text for 248 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 6k61:A (2.37) BS01 CL0 1.97.1.12 GO:0000287 ... P58576 31595062
    2 6k61:A (2.37) BS02 CLA 1.97.1.12 GO:0000287 ... P58576 31595062
    3 6k61:A (2.37) BS03 CLA 1.97.1.12 GO:0000287 ... P58576 31595062
    4 6k61:A (2.37) BS04 CLA 1.97.1.12 GO:0000287 ... P58576 31595062
    5 6k61:A (2.37) BS05 CLA 1.97.1.12 GO:0000287 ... P58576 31595062
    6 6k61:A (2.37) BS06 CLA 1.97.1.12 GO:0000287 ... P58576 31595062
    7 6k61:A (2.37) BS07 CLA 1.97.1.12 GO:0000287 ... P58576 31595062
    8 6k61:A (2.37) BS08 CLA 1.97.1.12 GO:0000287 ... P58576 31595062
    9 6k61:A (2.37) BS09 CLA 1.97.1.12 GO:0000287 ... P58576 31595062
    10 6k61:A (2.37) BS10 CLA 1.97.1.12 GO:0000287 ... P58576 31595062
    11 6k61:A (2.37) BS11 CLA 1.97.1.12 GO:0000287 ... P58576 31595062
    12 6k61:A (2.37) BS12 CLA 1.97.1.12 GO:0000287 ... P58576 31595062
    13 6k61:A (2.37) BS13 CLA 1.97.1.12 GO:0000287 ... P58576 31595062
    14 6k61:A (2.37) BS14 CLA 1.97.1.12 GO:0000287 ... P58576 31595062
    15 6k61:A (2.37) BS15 CLA 1.97.1.12 GO:0000287 ... P58576 31595062
    16 6k61:A (2.37) BS16 CLA 1.97.1.12 GO:0000287 ... P58576 31595062
    17 6k61:A (2.37) BS17 CLA 1.97.1.12 GO:0000287 ... P58576 31595062
    18 6k61:A (2.37) BS18 CLA 1.97.1.12 GO:0000287 ... P58576 31595062
    19 6k61:A (2.37) BS19 CLA 1.97.1.12 GO:0000287 ... P58576 31595062
    20 6k61:A (2.37) BS20 CLA 1.97.1.12 GO:0000287 ... P58576 31595062
    21 6k61:A (2.37) BS21 CLA 1.97.1.12 GO:0000287 ... P58576 31595062
    22 6k61:A (2.37) BS22 CLA 1.97.1.12 GO:0000287 ... P58576 31595062
    23 6k61:A (2.37) BS23 CLA 1.97.1.12 GO:0000287 ... P58576 31595062
    24 6k61:A (2.37) BS24 CLA 1.97.1.12 GO:0000287 ... P58576 31595062
    25 6k61:A (2.37) BS25 CLA 1.97.1.12 GO:0000287 ... P58576 31595062
    26 6k61:A (2.37) BS26 CLA 1.97.1.12 GO:0000287 ... P58576 31595062
    27 6k61:A (2.37) BS27 CLA 1.97.1.12 GO:0000287 ... P58576 31595062
    28 6k61:A (2.37) BS28 CLA 1.97.1.12 GO:0000287 ... P58576 31595062
    29 6k61:A (2.37) BS29 CLA 1.97.1.12 GO:0000287 ... P58576 31595062
    30 6k61:A (2.37) BS30 CLA 1.97.1.12 GO:0000287 ... P58576 31595062
    31 6k61:A (2.37) BS31 CLA 1.97.1.12 GO:0000287 ... P58576 31595062
    32 6k61:A (2.37) BS32 CLA 1.97.1.12 GO:0000287 ... P58576 31595062
    33 6k61:A (2.37) BS33 CLA 1.97.1.12 GO:0000287 ... P58576 31595062
    34 6k61:A (2.37) BS34 CLA 1.97.1.12 GO:0000287 ... P58576 31595062
    35 6k61:A (2.37) BS35 CLA 1.97.1.12 GO:0000287 ... P58576 31595062
    36 6k61:A (2.37) BS36 CLA 1.97.1.12 GO:0000287 ... P58576 31595062
    37 6k61:A (2.37) BS37 CLA 1.97.1.12 GO:0000287 ... P58576 31595062
    38 6k61:A (2.37) BS38 CLA 1.97.1.12 GO:0000287 ... P58576 31595062
    39 6k61:A (2.37) BS39 CLA 1.97.1.12 GO:0000287 ... P58576 31595062
    40 6k61:A (2.37) BS40 CLA 1.97.1.12 GO:0000287 ... P58576 31595062
    41 6k61:A (2.37) BS41 CLA 1.97.1.12 GO:0000287 ... P58576 31595062
    42 6k61:A (2.37) BS42 CLA 1.97.1.12 GO:0000287 ... P58576 31595062
    43 6k61:A (2.37) BS43 CLA 1.97.1.12 GO:0000287 ... P58576 31595062
    44 6k61:A (2.37) BS44 PQN 1.97.1.12 GO:0000287 ... P58576 31595062
    45 6k61:A (2.37) BS45 SF4 1.97.1.12 GO:0000287 ... P58576 31595062
    46 6k61:A (2.37) BS46 CLA 1.97.1.12 GO:0000287 ... P58576 31595062
    47 6k61:A (2.37) BS47 CLA 1.97.1.12 GO:0000287 ... P58576 31595062
    48 6k61:A (2.37) BS48 CLA 1.97.1.12 GO:0000287 ... P58576 31595062
    49 6k61:A (2.37) BS49 CLA 1.97.1.12 GO:0000287 ... P58576 31595062
    50 6k61:A (2.37) BS50 CLA 1.97.1.12 GO:0000287 ... P58576 31595062
    51 6k61:B (2.37) BS01 CL0 1.97.1.12 GO:0000287 ... P58565 31595062
    52 6k61:B (2.37) BS02 CLA 1.97.1.12 GO:0000287 ... P58565 31595062
    53 6k61:B (2.37) BS03 CLA 1.97.1.12 GO:0000287 ... P58565 31595062
    54 6k61:B (2.37) BS04 CLA 1.97.1.12 GO:0000287 ... P58565 31595062
    55 6k61:B (2.37) BS05 CLA 1.97.1.12 GO:0000287 ... P58565 31595062
    56 6k61:B (2.37) BS06 SF4 1.97.1.12 GO:0000287 ... P58565 31595062
    57 6k61:B (2.37) BS07 CLA 1.97.1.12 GO:0000287 ... P58565 31595062
    58 6k61:B (2.37) BS08 CLA 1.97.1.12 GO:0000287 ... P58565 31595062
    59 6k61:B (2.37) BS09 CLA 1.97.1.12 GO:0000287 ... P58565 31595062
    60 6k61:B (2.37) BS10 CLA 1.97.1.12 GO:0000287 ... P58565 31595062
    61 6k61:B (2.37) BS11 CLA 1.97.1.12 GO:0000287 ... P58565 31595062
    62 6k61:B (2.37) BS12 CLA 1.97.1.12 GO:0000287 ... P58565 31595062
    63 6k61:B (2.37) BS13 CLA 1.97.1.12 GO:0000287 ... P58565 31595062
    64 6k61:B (2.37) BS14 CLA 1.97.1.12 GO:0000287 ... P58565 31595062
    65 6k61:B (2.37) BS15 CLA 1.97.1.12 GO:0000287 ... P58565 31595062
    66 6k61:B (2.37) BS16 CLA 1.97.1.12 GO:0000287 ... P58565 31595062
    67 6k61:B (2.37) BS17 CLA 1.97.1.12 GO:0000287 ... P58565 31595062
    68 6k61:B (2.37) BS18 CLA 1.97.1.12 GO:0000287 ... P58565 31595062
    69 6k61:B (2.37) BS19 CLA 1.97.1.12 GO:0000287 ... P58565 31595062
    70 6k61:B (2.37) BS20 CLA 1.97.1.12 GO:0000287 ... P58565 31595062
    71 6k61:B (2.37) BS21 CLA 1.97.1.12 GO:0000287 ... P58565 31595062
    72 6k61:B (2.37) BS22 CLA 1.97.1.12 GO:0000287 ... P58565 31595062
    73 6k61:B (2.37) BS23 CLA 1.97.1.12 GO:0000287 ... P58565 31595062
    74 6k61:B (2.37) BS24 CLA 1.97.1.12 GO:0000287 ... P58565 31595062
    75 6k61:B (2.37) BS25 CLA 1.97.1.12 GO:0000287 ... P58565 31595062
    76 6k61:B (2.37) BS26 CLA 1.97.1.12 GO:0000287 ... P58565 31595062
    77 6k61:B (2.37) BS27 CLA 1.97.1.12 GO:0000287 ... P58565 31595062
    78 6k61:B (2.37) BS28 CLA 1.97.1.12 GO:0000287 ... P58565 31595062
    79 6k61:B (2.37) BS29 CLA 1.97.1.12 GO:0000287 ... P58565 31595062
    80 6k61:B (2.37) BS30 CLA 1.97.1.12 GO:0000287 ... P58565 31595062
    81 6k61:B (2.37) BS31 CLA 1.97.1.12 GO:0000287 ... P58565 31595062
    82 6k61:B (2.37) BS32 CLA 1.97.1.12 GO:0000287 ... P58565 31595062
    83 6k61:B (2.37) BS33 CLA 1.97.1.12 GO:0000287 ... P58565 31595062
    84 6k61:B (2.37) BS34 CLA 1.97.1.12 GO:0000287 ... P58565 31595062
    85 6k61:B (2.37) BS35 CLA 1.97.1.12 GO:0000287 ... P58565 31595062
    86 6k61:B (2.37) BS36 CLA 1.97.1.12 GO:0000287 ... P58565 31595062
    87 6k61:B (2.37) BS37 CLA 1.97.1.12 GO:0000287 ... P58565 31595062
    88 6k61:B (2.37) BS38 CLA 1.97.1.12 GO:0000287 ... P58565 31595062
    89 6k61:B (2.37) BS39 CLA 1.97.1.12 GO:0000287 ... P58565 31595062
    90 6k61:B (2.37) BS40 CLA 1.97.1.12 GO:0000287 ... P58565 31595062
    91 6k61:B (2.37) BS41 CLA 1.97.1.12 GO:0000287 ... P58565 31595062
    92 6k61:B (2.37) BS42 CLA 1.97.1.12 GO:0000287 ... P58565 31595062
    93 6k61:B (2.37) BS43 CLA 1.97.1.12 GO:0000287 ... P58565 31595062
    94 6k61:B (2.37) BS44 CLA 1.97.1.12 GO:0000287 ... P58565 31595062
    95 6k61:B (2.37) BS45 CLA 1.97.1.12 GO:0000287 ... P58565 31595062
    96 6k61:B (2.37) BS46 CLA 1.97.1.12 GO:0000287 ... P58565 31595062
    97 6k61:B (2.37) BS47 PQN 1.97.1.12 GO:0000287 ... P58565 31595062
    98 6k61:B (2.37) BS48 CLA 1.97.1.12 GO:0000287 ... P58565 31595062
    99 6k61:C (2.37) BS01 SF4 1.97.1.12 GO:0009055 ... P0A410 31595062
    100 6k61:C (2.37) BS02 SF4 1.97.1.12 GO:0009055 ... P0A410 31595062
    101 6k61:F (2.37) BS01 CLA ? GO:0009522 ... P58564 31595062
    102 6k61:F (2.37) BS02 CLA ? GO:0009522 ... P58564 31595062
    103 6k61:F (2.37) BS03 CLA ? GO:0009522 ... P58564 31595062
    104 6k61:F (2.37) BS04 CLA ? GO:0009522 ... P58564 31595062
    105 6k61:I (2.37) BS01 CLA ? GO:0009522 ... P58560 31595062
    106 6k61:I (2.37) BS02 CLA ? GO:0009522 ... P58560 31595062
    107 6k61:J (2.37) BS01 CLA ? GO:0009522 ... P58568 31595062
    108 6k61:J (2.37) BS02 CLA ? GO:0009522 ... P58568 31595062
    109 6k61:J (2.37) BS03 CLA ? GO:0009522 ... P58568 31595062
    110 6k61:K (2.37) BS01 CLA ? GO:0009522 ... P58583 31595062
    111 6k61:K (2.37) BS02 CLA ? GO:0009522 ... P58583 31595062
    112 6k61:K (2.37) BS03 CLA ? GO:0009522 ... P58583 31595062
    113 6k61:K (2.37) BS04 CLA ? GO:0009522 ... P58583 31595062
    114 6k61:L (2.37) BS01 CLA ? GO:0009522 ... P58577 31595062
    115 6k61:L (2.37) BS02 CLA ? GO:0009522 ... P58577 31595062
    116 6k61:L (2.37) BS03 CLA ? GO:0009522 ... P58577 31595062
    117 6k61:L (2.37) BS04 CLA ? GO:0009522 ... P58577 31595062
    118 6k61:L (2.37) BS05 CLA ? GO:0009522 ... P58577 31595062
    119 6k61:L (2.37) BS06 CLA ? GO:0009522 ... P58577 31595062
    120 6k61:M (2.37) BS01 CLA ? GO:0009522 ... Q8YNB0 31595062
    121 6k61:X (2.37) BS01 CLA ? GO:0009522 ... P58566 31595062
    122 6k61:X (2.37) BS02 CLA ? GO:0009522 ... P58566 31595062
    123 6k61:X (2.37) BS03 CLA ? GO:0009522 ... P58566 31595062
    124 6k61:a (2.37) BS01 CL0 1.97.1.12 GO:0000287 ... P58576 31595062
    125 6k61:a (2.37) BS02 CLA 1.97.1.12 GO:0000287 ... P58576 31595062
    126 6k61:a (2.37) BS03 CLA 1.97.1.12 GO:0000287 ... P58576 31595062
    127 6k61:a (2.37) BS04 CLA 1.97.1.12 GO:0000287 ... P58576 31595062
    128 6k61:a (2.37) BS05 CLA 1.97.1.12 GO:0000287 ... P58576 31595062
    129 6k61:a (2.37) BS06 CLA 1.97.1.12 GO:0000287 ... P58576 31595062
    130 6k61:a (2.37) BS07 CLA 1.97.1.12 GO:0000287 ... P58576 31595062
    131 6k61:a (2.37) BS08 CLA 1.97.1.12 GO:0000287 ... P58576 31595062
    132 6k61:a (2.37) BS09 CLA 1.97.1.12 GO:0000287 ... P58576 31595062
    133 6k61:a (2.37) BS10 CLA 1.97.1.12 GO:0000287 ... P58576 31595062
    134 6k61:a (2.37) BS11 CLA 1.97.1.12 GO:0000287 ... P58576 31595062
    135 6k61:a (2.37) BS12 CLA 1.97.1.12 GO:0000287 ... P58576 31595062
    136 6k61:a (2.37) BS13 CLA 1.97.1.12 GO:0000287 ... P58576 31595062
    137 6k61:a (2.37) BS14 CLA 1.97.1.12 GO:0000287 ... P58576 31595062
    138 6k61:a (2.37) BS15 CLA 1.97.1.12 GO:0000287 ... P58576 31595062
    139 6k61:a (2.37) BS16 CLA 1.97.1.12 GO:0000287 ... P58576 31595062
    140 6k61:a (2.37) BS17 CLA 1.97.1.12 GO:0000287 ... P58576 31595062
    141 6k61:a (2.37) BS18 CLA 1.97.1.12 GO:0000287 ... P58576 31595062
    142 6k61:a (2.37) BS19 CLA 1.97.1.12 GO:0000287 ... P58576 31595062
    143 6k61:a (2.37) BS20 CLA 1.97.1.12 GO:0000287 ... P58576 31595062
    144 6k61:a (2.37) BS21 CLA 1.97.1.12 GO:0000287 ... P58576 31595062
    145 6k61:a (2.37) BS22 CLA 1.97.1.12 GO:0000287 ... P58576 31595062
    146 6k61:a (2.37) BS23 CLA 1.97.1.12 GO:0000287 ... P58576 31595062
    147 6k61:a (2.37) BS24 CLA 1.97.1.12 GO:0000287 ... P58576 31595062
    148 6k61:a (2.37) BS25 CLA 1.97.1.12 GO:0000287 ... P58576 31595062
    149 6k61:a (2.37) BS26 CLA 1.97.1.12 GO:0000287 ... P58576 31595062
    150 6k61:a (2.37) BS27 CLA 1.97.1.12 GO:0000287 ... P58576 31595062
    151 6k61:a (2.37) BS28 CLA 1.97.1.12 GO:0000287 ... P58576 31595062
    152 6k61:a (2.37) BS29 CLA 1.97.1.12 GO:0000287 ... P58576 31595062
    153 6k61:a (2.37) BS30 CLA 1.97.1.12 GO:0000287 ... P58576 31595062
    154 6k61:a (2.37) BS31 CLA 1.97.1.12 GO:0000287 ... P58576 31595062
    155 6k61:a (2.37) BS32 CLA 1.97.1.12 GO:0000287 ... P58576 31595062
    156 6k61:a (2.37) BS33 CLA 1.97.1.12 GO:0000287 ... P58576 31595062
    157 6k61:a (2.37) BS34 CLA 1.97.1.12 GO:0000287 ... P58576 31595062
    158 6k61:a (2.37) BS35 CLA 1.97.1.12 GO:0000287 ... P58576 31595062
    159 6k61:a (2.37) BS36 CLA 1.97.1.12 GO:0000287 ... P58576 31595062
    160 6k61:a (2.37) BS37 CLA 1.97.1.12 GO:0000287 ... P58576 31595062
    161 6k61:a (2.37) BS38 CLA 1.97.1.12 GO:0000287 ... P58576 31595062
    162 6k61:a (2.37) BS39 CLA 1.97.1.12 GO:0000287 ... P58576 31595062
    163 6k61:a (2.37) BS40 CLA 1.97.1.12 GO:0000287 ... P58576 31595062
    164 6k61:a (2.37) BS41 CLA 1.97.1.12 GO:0000287 ... P58576 31595062
    165 6k61:a (2.37) BS42 PQN 1.97.1.12 GO:0000287 ... P58576 31595062
    166 6k61:a (2.37) BS43 SF4 1.97.1.12 GO:0000287 ... P58576 31595062
    167 6k61:a (2.37) BS44 CLA 1.97.1.12 GO:0000287 ... P58576 31595062
    168 6k61:a (2.37) BS45 CLA 1.97.1.12 GO:0000287 ... P58576 31595062
    169 6k61:a (2.37) BS46 CLA 1.97.1.12 GO:0000287 ... P58576 31595062
    170 6k61:a (2.37) BS47 CLA 1.97.1.12 GO:0000287 ... P58576 31595062
    171 6k61:a (2.37) BS48 CLA 1.97.1.12 GO:0000287 ... P58576 31595062
    172 6k61:a (2.37) BS49 CLA 1.97.1.12 GO:0000287 ... P58576 31595062
    173 6k61:a (2.37) BS50 CLA 1.97.1.12 GO:0000287 ... P58576 31595062
    174 6k61:b (2.37) BS01 CL0 1.97.1.12 GO:0000287 ... P58565 31595062
    175 6k61:b (2.37) BS02 CLA 1.97.1.12 GO:0000287 ... P58565 31595062
    176 6k61:b (2.37) BS03 CLA 1.97.1.12 GO:0000287 ... P58565 31595062
    177 6k61:b (2.37) BS04 SF4 1.97.1.12 GO:0000287 ... P58565 31595062
    178 6k61:b (2.37) BS05 CLA 1.97.1.12 GO:0000287 ... P58565 31595062
    179 6k61:b (2.37) BS06 CLA 1.97.1.12 GO:0000287 ... P58565 31595062
    180 6k61:b (2.37) BS07 CLA 1.97.1.12 GO:0000287 ... P58565 31595062
    181 6k61:b (2.37) BS08 CLA 1.97.1.12 GO:0000287 ... P58565 31595062
    182 6k61:b (2.37) BS09 CLA 1.97.1.12 GO:0000287 ... P58565 31595062
    183 6k61:b (2.37) BS10 CLA 1.97.1.12 GO:0000287 ... P58565 31595062
    184 6k61:b (2.37) BS11 CLA 1.97.1.12 GO:0000287 ... P58565 31595062
    185 6k61:b (2.37) BS12 CLA 1.97.1.12 GO:0000287 ... P58565 31595062
    186 6k61:b (2.37) BS13 CLA 1.97.1.12 GO:0000287 ... P58565 31595062
    187 6k61:b (2.37) BS14 CLA 1.97.1.12 GO:0000287 ... P58565 31595062
    188 6k61:b (2.37) BS15 CLA 1.97.1.12 GO:0000287 ... P58565 31595062
    189 6k61:b (2.37) BS16 CLA 1.97.1.12 GO:0000287 ... P58565 31595062
    190 6k61:b (2.37) BS17 CLA 1.97.1.12 GO:0000287 ... P58565 31595062
    191 6k61:b (2.37) BS18 CLA 1.97.1.12 GO:0000287 ... P58565 31595062
    192 6k61:b (2.37) BS19 CLA 1.97.1.12 GO:0000287 ... P58565 31595062
    193 6k61:b (2.37) BS20 CLA 1.97.1.12 GO:0000287 ... P58565 31595062
    194 6k61:b (2.37) BS21 CLA 1.97.1.12 GO:0000287 ... P58565 31595062
    195 6k61:b (2.37) BS22 CLA 1.97.1.12 GO:0000287 ... P58565 31595062
    196 6k61:b (2.37) BS23 CLA 1.97.1.12 GO:0000287 ... P58565 31595062
    197 6k61:b (2.37) BS24 CLA 1.97.1.12 GO:0000287 ... P58565 31595062
    198 6k61:b (2.37) BS25 CLA 1.97.1.12 GO:0000287 ... P58565 31595062
    199 6k61:b (2.37) BS26 CLA 1.97.1.12 GO:0000287 ... P58565 31595062
    200 6k61:b (2.37) BS27 CLA 1.97.1.12 GO:0000287 ... P58565 31595062

    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
  • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218