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BioLiP
Download all results in tab-seperated text for 19 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 6ig0:A (3.37) BS01 rna N/A N/A N/A 30503210
    2 6ig0:A (3.37) BS02 rna N/A N/A N/A 30503210
    3 6ig0:A (3.37) BS03 ZN N/A N/A N/A 30503210
    4 6ig0:A (3.37) BS04 ATP N/A N/A N/A 30503210
    5 6ig0:A (3.37) BS05 ATP N/A N/A N/A 30503210
    6 6ig0:A (3.37) BS06 MG N/A N/A N/A 30503210
    7 6ig0:A (3.37) BS07 MG N/A N/A N/A 30503210
    8 6ig0:B (3.37) BS01 rna N/A N/A N/A 30503210
    9 6ig0:B (3.37) BS02 rna N/A N/A N/A 30503210
    10 6ig0:C (3.37) BS01 rna N/A N/A N/A 30503210
    11 6ig0:D (3.37) BS01 rna N/A N/A N/A 30503210
    12 6ig0:E (3.37) BS01 rna N/A N/A N/A 30503210
    13 6ig0:E (3.37) BS02 rna N/A N/A N/A 30503210
    14 6ig0:F (3.37) BS01 rna N/A N/A N/A 30503210
    15 6ig0:F (3.37) BS02 rna N/A N/A N/A 30503210
    16 6ig0:G (3.37) BS01 rna N/A N/A N/A 30503210
    17 6ig0:G (3.37) BS02 rna N/A N/A N/A 30503210
    18 6ig0:H (3.37) BS01 rna N/A N/A N/A 30503210
    19 6ig0:H (3.37) BS02 rna N/A N/A N/A 30503210
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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