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BioLiP
Download all results in tab-seperated text for 107 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 6hcj:A3 (3.8) BS01 rna ? GO:0002181 ... G1TT27 30293783
    2 6hcj:A3 (3.8) BS02 rna ? GO:0002181 ... G1TT27 30293783
    3 6hcj:B2 (3.8) BS01 rna N/A GO:0003735 ... N/A 30293783
    4 6hcj:B3 (3.8) BS01 rna ? GO:0003723 ... G1TL06 30293783
    5 6hcj:C2 (3.8) BS01 rna ? GO:0003735 ... G1SS70 30293783
    6 6hcj:C2 (3.8) BS02 rna ? GO:0003735 ... G1SS70 30293783
    7 6hcj:C3 (3.8) BS01 rna N/A GO:0003735 ... N/A 30293783
    8 6hcj:C3 (3.8) BS02 rna N/A GO:0003735 ... N/A 30293783
    9 6hcj:D2 (3.8) BS01 rna N/A GO:0003723 ... N/A 30293783
    10 6hcj:D3 (3.8) BS01 rna ? GO:0000027 ... P19949 30293783
    11 6hcj:D3 (3.8) BS02 rna ? GO:0000027 ... P19949 30293783
    12 6hcj:E2 (3.8) BS01 rna 4.2.99.18 GO:0003677 ... G1TNM3 30293783
    13 6hcj:E2 (3.8) BS02 rna 4.2.99.18 GO:0003677 ... G1TNM3 30293783
    14 6hcj:E3 (3.8) BS01 rna ? GO:0000027 ... G1SKF7 30293783
    15 6hcj:F2 (3.8) BS01 rna N/A GO:0003723 ... N/A 30293783
    16 6hcj:F3 (3.8) BS01 rna ? GO:0000463 ... G1TUB1 30293783
    17 6hcj:F3 (3.8) BS02 rna ? GO:0000463 ... G1TUB1 30293783
    18 6hcj:G2 (3.8) BS01 rna ? GO:0000028 ... G1TFM5 30293783
    19 6hcj:G2 (3.8) BS02 MG ? GO:0000028 ... G1TFM5 30293783
    20 6hcj:G3 (3.8) BS01 rna N/A GO:0042254 ... N/A 30293783
    21 6hcj:G3 (3.8) BS02 rna N/A GO:0042254 ... N/A 30293783
    22 6hcj:H2 (3.8) BS01 rna ? GO:0000082 ... G1TM55 30293783
    23 6hcj:H3 (3.8) BS01 rna ? GO:0002181 ... G1SWI6 30293783
    24 6hcj:I2 (3.8) BS01 rna ? GO:0003735 ... G1SVB0 30293783
    25 6hcj:I3 (3.8) BS01 rna ? GO:0000027 ... B7NZQ2 30293783
    26 6hcj:I3 (3.8) BS02 rna ? GO:0000027 ... B7NZQ2 30293783
    27 6hcj:I3 (3.8) BS03 rna ? GO:0000027 ... B7NZQ2 30293783
    28 6hcj:J2 (3.8) BS01 rna N/A GO:0003735 ... N/A 30293783
    29 6hcj:J3 (3.8) BS01 rna ? GO:0003723 ... G1TUB8 30293783
    30 6hcj:J3 (3.8) BS02 rna ? GO:0003723 ... G1TUB8 30293783
    31 6hcj:K2 (3.8) BS01 rna ? GO:0003723 ... B7NZS8 30293783
    32 6hcj:L2 (3.8) BS01 rna ? GO:0003723 ... G1TPV3 30293783
    33 6hcj:L3 (3.8) BS01 rna N/A GO:0003735 ... N/A 30293783
    34 6hcj:M2 (3.8) BS01 rna ? GO:0003735 ... G1TRM4 30293783
    35 6hcj:M3 (3.8) BS01 rna ? GO:0003723 ... G1SZ12 30293783
    36 6hcj:N2 (3.8) BS01 rna ? GO:0003735 ... G1SFR8 30293783
    37 6hcj:N3 (3.8) BS01 rna ? GO:0002181 ... G1T0C1 30293783
    38 6hcj:N3 (3.8) BS02 rna ? GO:0002181 ... G1T0C1 30293783
    39 6hcj:O2 (3.8) BS01 rna ? GO:0003735 ... G1SP51 30293783
    40 6hcj:O3 (3.8) BS01 rna N/A GO:0003735 ... N/A 30293783
    41 6hcj:P2 (3.8) BS01 rna N/A GO:0003735 ... N/A 30293783
    42 6hcj:P3 (3.8) BS01 rna ? GO:0002181 ... G1SCJ6 30293783
    43 6hcj:P3 (3.8) BS02 rna ? GO:0002181 ... G1SCJ6 30293783
    44 6hcj:Q2 (3.8) BS01 rna ? GO:0000028 ... G1U0Q2 30293783
    45 6hcj:Q3 (3.8) BS01 rna N/A GO:0003735 ... N/A 30293783
    46 6hcj:R2 (3.8) BS01 rna ? GO:0000462 ... G1SGX4 30293783
    47 6hcj:R3 (3.8) BS01 rna N/A GO:0003723 ... N/A 30293783
    48 6hcj:R3 (3.8) BS02 rna N/A GO:0003723 ... N/A 30293783
    49 6hcj:S2 (3.8) BS01 rna ? GO:0003735 ... G1TU13 30293783
    50 6hcj:S3 (3.8) BS01 rna N/A GO:0003735 ... N/A 30293783
    51 6hcj:S3 (3.8) BS02 rna N/A GO:0003735 ... N/A 30293783
    52 6hcj:T2 (3.8) BS01 rna ? GO:0003676 ... G1TPG3 30293783
    53 6hcj:T3 (3.8) BS01 rna ? GO:0003735 ... G1SHQ2 30293783
    54 6hcj:T3 (3.8) BS02 rna ? GO:0003735 ... G1SHQ2 30293783
    55 6hcj:U2 (3.8) BS01 rna N/A GO:0003735 ... N/A 30293783
    56 6hcj:U3 (3.8) BS01 rna N/A GO:0003735 ... N/A 30293783
    57 6hcj:V2 (3.8) BS01 rna ? GO:0003723 ... G1SIZ2 30293783
    58 6hcj:V3 (3.8) BS01 rna ? GO:0000122 ... G1T6D1 30293783
    59 6hcj:V3 (3.8) BS02 rna ? GO:0000122 ... G1T6D1 30293783
    60 6hcj:X2 (3.8) BS01 rna ? GO:0003735 ... G1TG89 30293783
    61 6hcj:X3 (3.8) BS01 rna ? GO:0000027 ... G1SE76 30293783
    62 6hcj:X3 (3.8) BS02 rna ? GO:0000027 ... G1SE76 30293783
    63 6hcj:Y2 (3.8) BS01 rna N/A GO:0003735 ... N/A 30293783
    64 6hcj:Y3 (3.8) BS01 rna ? GO:0002181 ... G1SQH0 30293783
    65 6hcj:Y3 (3.8) BS02 rna ? GO:0002181 ... G1SQH0 30293783
    66 6hcj:Z2 (3.8) BS01 rna N/A GO:0003735 ... N/A 30293783
    67 6hcj:Z3 (3.8) BS01 rna ? GO:0003735 ... G1TXF6 30293783
    68 6hcj:a3 (3.8) BS01 rna ? GO:0003735 ... G1SNY0 30293783
    69 6hcj:b2 (3.8) BS01 rna N/A GO:0003735 ... N/A 30293783
    70 6hcj:b2 (3.8) BS02 rna N/A GO:0003735 ... N/A 30293783
    71 6hcj:b2 (3.8) BS03 ZN N/A GO:0003735 ... N/A 30293783
    72 6hcj:b3 (3.8) BS01 rna ? GO:0002181 ... G1SGR6 30293783
    73 6hcj:c2 (3.8) BS01 rna ? GO:0000028 ... G1TZ76 30293783
    74 6hcj:c3 (3.8) BS01 rna ? GO:0002181 ... G1TDL2 30293783
    75 6hcj:d2 (3.8) BS01 rna ? GO:0000028 ... G1TIB4 30293783
    76 6hcj:d2 (3.8) BS02 rna ? GO:0000028 ... G1TIB4 30293783
    77 6hcj:d3 (3.8) BS01 rna ? GO:0002181 ... G1SHG0 30293783
    78 6hcj:e2 (3.8) BS01 rna ? GO:0003735 ... G1U7M4 30293783
    79 6hcj:e2 (3.8) BS02 ZN ? GO:0003735 ... G1U7M4 30293783
    80 6hcj:e3 (3.8) BS01 rna ? GO:0003735 ... G1TUN8 30293783
    81 6hcj:f2 (3.8) BS01 rna ? GO:0003735 ... G1T8A2 30293783
    82 6hcj:f3 (3.8) BS01 rna ? GO:0000049 ... G1SF08 30293783
    83 6hcj:g2 (3.8) BS01 rna ? GO:0003723 ... G1SK22 30293783
    84 6hcj:g2 (3.8) BS02 ZN ? GO:0003723 ... G1SK22 30293783
    85 6hcj:g3 (3.8) BS01 rna N/A GO:0003735 ... N/A 30293783
    86 6hcj:h2 (3.8) BS01 rna ? GO:0001891 ... G1SJB4 30293783
    87 6hcj:h3 (3.8) BS01 rna ? GO:0000463 ... G1SIT5 30293783
    88 6hcj:h3 (3.8) BS02 rna ? GO:0000463 ... G1SIT5 30293783
    89 6hcj:i3 (3.8) BS01 rna ? GO:0002181 ... G1TTQ5 30293783
    90 6hcj:j3 (3.8) BS01 rna ? GO:0003723 ... U3KPD5 30293783
    91 6hcj:j3 (3.8) BS02 rna ? GO:0003723 ... U3KPD5 30293783
    92 6hcj:j3 (3.8) BS03 ZN ? GO:0003723 ... U3KPD5 30293783
    93 6hcj:k3 (3.8) BS01 rna N/A GO:0003735 ... N/A 30293783
    94 6hcj:l3 (3.8) BS01 rna ? GO:0003735 ... G1TTN1 30293783
    95 6hcj:l3 (3.8) BS02 rna ? GO:0003735 ... G1TTN1 30293783
    96 6hcj:m3 (3.8) BS01 rna N/A GO:0003735 ... N/A 30293783
    97 6hcj:m3 (3.8) BS02 ZN N/A GO:0003735 ... N/A 30293783
    98 6hcj:o3 (3.8) BS01 rna N/A GO:0003735 ... N/A 30293783
    99 6hcj:o3 (3.8) BS02 rna N/A GO:0003735 ... N/A 30293783
    100 6hcj:o3 (3.8) BS03 ZN N/A GO:0003735 ... N/A 30293783
    101 6hcj:p3 (3.8) BS01 rna ? GO:0003735 ... G1SY53 30293783
    102 6hcj:p3 (3.8) BS02 rna ? GO:0003735 ... G1SY53 30293783
    103 6hcj:p3 (3.8) BS03 ZN ? GO:0003735 ... G1SY53 30293783
    104 6hcj:r3 (3.8) BS01 rna ? GO:0003735 ... G1U7L1 30293783
    105 6hcj:t3 (3.8) BS01 rna N/A GO:0042254 ... N/A 30293783
    106 6hcj:u3 (3.8) BS01 rna ? GO:0003723 ... G1SMR7 30293783
    107 6hcj:w3 (3.8) BS01 rna ? GO:0000470 ... G1SKZ8 30293783
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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