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BioLiP
Download all results in tab-seperated text for 50 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 5zwm:1 (3.4) BS01 rna ? GO:0000245 ... P49955 29794219
    2 5zwm:1 (3.4) BS02 rna ? GO:0000245 ... P49955 29794219
    3 5zwm:2 (3.4) BS01 rna ? GO:0000245 ... Q02554 29794219
    4 5zwm:4 (3.4) BS01 rna ? GO:0000398 ... Q99181 29794219
    5 5zwm:5 (3.4) BS01 rna ? GO:0000245 ... Q06835 29794219
    6 5zwm:5 (3.4) BS02 ZN ? GO:0000245 ... Q06835 29794219
    7 5zwm:5 (3.4) BS03 ZN ? GO:0000245 ... Q06835 29794219
    8 5zwm:5 (3.4) BS04 ZN ? GO:0000245 ... Q06835 29794219
    9 5zwm:A (3.4) BS01 rna ? GO:0000244 ... P33334 29794219
    10 5zwm:A (3.4) BS02 rna ? GO:0000244 ... P33334 29794219
    11 5zwm:A (3.4) BS03 rna ? GO:0000244 ... P33334 29794219
    12 5zwm:C (3.4) BS01 rna ? GO:0000244 ... P36048 29794219
    13 5zwm:C (3.4) BS02 GTP ? GO:0000244 ... P36048 29794219
    14 5zwm:C (3.4) BS03 MG ? GO:0000244 ... P36048 29794219
    15 5zwm:D (3.4) BS01 rna 3.6.4.13 GO:0000388 ... P32639 29794219
    16 5zwm:E (3.4) BS01 rna ? GO:0000398 ... Q06819 29794219
    17 5zwm:J (3.4) BS01 rna ? GO:0000245 ... Q03338 29794219
    18 5zwm:J (3.4) BS02 rna ? GO:0000245 ... Q03338 29794219
    19 5zwm:K (3.4) BS01 rna ? GO:0000245 ... P20053 29794219
    20 5zwm:L (3.4) BS01 rna ? GO:0000244 ... P49704 29794219
    21 5zwm:L (3.4) BS02 rna ? GO:0000244 ... P49704 29794219
    22 5zwm:M (3.4) BS01 rna ? GO:0000245 ... P39990 29794219
    23 5zwm:M (3.4) BS02 rna ? GO:0000245 ... P39990 29794219
    24 5zwm:N (3.4) BS01 rna ? GO:0000244 ... P19735 29794219
    25 5zwm:P (3.4) BS01 rna ? GO:0000243 ... P40018 29794219
    26 5zwm:Q (3.4) BS01 rna ? GO:0000243 ... Q02260 29794219
    27 5zwm:R (3.4) BS01 rna ? GO:0000243 ... Q06217 29794219
    28 5zwm:S (3.4) BS01 rna ? GO:0000243 ... P43321 29794219
    29 5zwm:T (3.4) BS01 rna ? GO:0000243 ... Q12330 29794219
    30 5zwm:U (3.4) BS01 rna ? GO:0000243 ... P54999 29794219
    31 5zwm:V (3.4) BS01 rna ? GO:0000243 ... P40204 29794219
    32 5zwm:X (3.4) BS01 rna ? GO:0000245 ... P40565 29794219
    33 5zwm:X (3.4) BS02 peptide ? GO:0000245 ... P40565 29794219
    34 5zwm:a (3.4) BS01 rna ? GO:0000243 ... P40018 29794219
    35 5zwm:c (3.4) BS01 rna ? GO:0000243 ... Q06217 29794219
    36 5zwm:d (3.4) BS01 rna ? GO:0000243 ... P43321 29794219
    37 5zwm:h (3.4) BS01 rna ? GO:0000243 ... P40018 29794219
    38 5zwm:i (3.4) BS01 rna ? GO:0000243 ... Q12330 29794219
    39 5zwm:j (3.4) BS01 rna ? GO:0000243 ... P54999 29794219
    40 5zwm:k (3.4) BS01 rna ? GO:0000243 ... P40204 29794219
    41 5zwm:l (3.4) BS01 rna ? GO:0000243 ... P43321 29794219
    42 5zwm:m (3.4) BS01 rna ? GO:0000243 ... Q02260 29794219
    43 5zwm:n (3.4) BS01 rna ? GO:0000243 ... Q06217 29794219
    44 5zwm:p (3.4) BS01 rna ? GO:0000398 ... P40567 29794219
    45 5zwm:u (3.4) BS01 rna ? GO:0000395 ... P19736 29794219
    46 5zwm:u (3.4) BS02 ZN ? GO:0000395 ... P19736 29794219
    47 5zwm:u (3.4) BS03 ZN ? GO:0000395 ... P19736 29794219
    48 5zwm:v (3.4) BS01 rna ? GO:0000245 ... Q07350 29794219
    49 5zwm:v (3.4) BS02 rna ? GO:0000245 ... Q07350 29794219
    50 5zwm:v (3.4) BS03 ZN ? GO:0000245 ... Q07350 29794219
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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