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BioLiP
Download all results in tab-seperated text for 56 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 5xxb:A (3.17) BS01 rna N/A GO:0003723 ... N/A 28809395
    2 5xxb:B (3.17) BS01 rna N/A GO:0003735 ... N/A 28809395
    3 5xxb:C (3.17) BS01 rna N/A GO:0003735 ... N/A 28809395
    4 5xxb:C (3.17) BS02 rna N/A GO:0003735 ... N/A 28809395
    5 5xxb:D (3.17) BS01 rna N/A GO:0003735 ... N/A 28809395
    6 5xxb:D (3.17) BS02 rna N/A GO:0003735 ... N/A 28809395
    7 5xxb:E (3.17) BS01 rna N/A GO:0003735 ... N/A 28809395
    8 5xxb:F (3.17) BS01 rna N/A GO:0000463 ... N/A 28809395
    9 5xxb:F (3.17) BS02 rna N/A GO:0000463 ... N/A 28809395
    10 5xxb:G (3.17) BS01 rna N/A GO:0042254 ... N/A 28809395
    11 5xxb:G (3.17) BS02 rna N/A GO:0042254 ... N/A 28809395
    12 5xxb:H (3.17) BS01 rna N/A GO:0003735 ... N/A 28809395
    13 5xxb:I (3.17) BS01 rna N/A GO:0003735 ... N/A 28809395
    14 5xxb:I (3.17) BS02 rna N/A GO:0003735 ... N/A 28809395
    15 5xxb:J (3.17) BS01 rna N/A GO:0003735 ... N/A 28809395
    16 5xxb:J (3.17) BS02 rna N/A GO:0003735 ... N/A 28809395
    17 5xxb:K (3.17) BS01 rna N/A GO:0003735 ... N/A 28809395
    18 5xxb:K (3.17) BS02 rna N/A GO:0003735 ... N/A 28809395
    19 5xxb:L (3.17) BS01 rna N/A GO:0003723 ... N/A 28809395
    20 5xxb:M (3.17) BS01 rna N/A GO:0003735 ... N/A 28809395
    21 5xxb:M (3.17) BS02 rna N/A GO:0003735 ... N/A 28809395
    22 5xxb:N (3.17) BS01 rna N/A GO:0003735 ... N/A 28809395
    23 5xxb:O (3.17) BS01 rna N/A GO:0003735 ... N/A 28809395
    24 5xxb:O (3.17) BS02 rna N/A GO:0003735 ... N/A 28809395
    25 5xxb:P (3.17) BS01 rna N/A GO:0003735 ... N/A 28809395
    26 5xxb:Q (3.17) BS01 rna N/A GO:0003723 ... N/A 28809395
    27 5xxb:R (3.17) BS01 rna N/A GO:0003735 ... N/A 28809395
    28 5xxb:R (3.17) BS02 rna N/A GO:0003735 ... N/A 28809395
    29 5xxb:S (3.17) BS01 rna N/A GO:0003735 ... N/A 28809395
    30 5xxb:T (3.17) BS01 rna N/A GO:0003735 ... N/A 28809395
    31 5xxb:U (3.17) BS01 rna N/A GO:0003735 ... N/A 28809395
    32 5xxb:V (3.17) BS01 rna N/A N/A N/A 28809395
    33 5xxb:W (3.17) BS01 rna N/A GO:0003735 ... N/A 28809395
    34 5xxb:W (3.17) BS02 rna N/A GO:0003735 ... N/A 28809395
    35 5xxb:X (3.17) BS01 rna N/A GO:0003723 ... N/A 28809395
    36 5xxb:X (3.17) BS02 rna N/A GO:0003723 ... N/A 28809395
    37 5xxb:Y (3.17) BS01 rna N/A GO:0003735 ... N/A 28809395
    38 5xxb:Z (3.17) BS01 rna N/A GO:0003735 ... N/A 28809395
    39 5xxb:a (3.17) BS01 rna N/A GO:0003735 ... N/A 28809395
    40 5xxb:b (3.17) BS01 rna N/A GO:0003723 ... N/A 28809395
    41 5xxb:c (3.17) BS01 rna N/A GO:0003735 ... N/A 28809395
    42 5xxb:d (3.17) BS01 rna N/A GO:0003735 ... N/A 28809395
    43 5xxb:e (3.17) BS01 rna N/A GO:0003735 ... N/A 28809395
    44 5xxb:f (3.17) BS01 rna N/A GO:0003735 ... N/A 28809395
    45 5xxb:g (3.17) BS01 rna N/A GO:0000463 ... N/A 28809395
    46 5xxb:g (3.17) BS02 rna N/A GO:0000463 ... N/A 28809395
    47 5xxb:h (3.17) BS01 rna N/A GO:0003735 ... N/A 28809395
    48 5xxb:i (3.17) BS01 rna N/A GO:0003735 ... N/A 28809395
    49 5xxb:i (3.17) BS02 rna N/A GO:0003735 ... N/A 28809395
    50 5xxb:j (3.17) BS01 rna N/A GO:0003735 ... N/A 28809395
    51 5xxb:k (3.17) BS01 rna N/A GO:0003735 ... N/A 28809395
    52 5xxb:k (3.17) BS02 rna N/A GO:0003735 ... N/A 28809395
    53 5xxb:l (3.17) BS01 rna N/A GO:0003735 ... N/A 28809395
    54 5xxb:n (3.17) BS01 rna N/A GO:0003735 ... N/A 28809395
    55 5xxb:o (3.17) BS01 rna N/A GO:0003735 ... N/A 28809395
    56 5xxb:p (3.17) BS01 rna N/A GO:0003735 ... N/A 28809395
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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