Home Research COVID-19 Services Publications People Teaching Job Opening News Forum --> -->
Online Services

●I-TASSER ●I-TASSER-MTD ●C-I-TASSER ●CR-I-TASSER ●QUARK ●C-QUARK ●LOMETS ●MUSTER ●CEthreader ●SEGMER ●DeepFold ●DeepFoldRNA ●FoldDesign ●COFACTOR ●COACH ●MetaGO ●TripletGO ●IonCom ●FG-MD ●ModRefiner ●REMO ●DEMO ●DEMO-EM ●DMFold ●SPRING ●COTH ●Threpp ●PEPPI ●BSpred ●ANGLOR ●EDock ●BSP-SLIM ●SAXSTER ●FUpred ●ThreaDom ●ThreaDomEx ●EvoDesign ●BindProf ●BindProfX ●SSIPe ●GPCR-I-TASSER ●MAGELLAN ●ResQ ●STRUM ●DAMpred

●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 96 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

    • Sort results by
    << < 1 > >>
    Go to page

    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 5nb3:A (1.38) BS01 PEB ? GO:0009579 ... A0A0E3W010 28918447
    2 5nb3:A (1.38) BS02 PEB ? GO:0009579 ... A0A0E3W010 28918447
    3 5nb3:A (1.38) BS03 PEB ? GO:0009579 ... A0A0E3W010 28918447
    4 5nb3:A (1.38) BS04 PEB ? GO:0009579 ... A0A0E3W010 28918447
    5 5nb3:B (1.38) BS01 PEB ? GO:0009579 ... A0A0E3W010 28918447
    6 5nb3:B (1.38) BS02 PEB ? GO:0009579 ... A0A0E3W010 28918447
    7 5nb3:B (1.38) BS03 PEB ? GO:0009579 ... A0A0E3W010 28918447
    8 5nb3:B (1.38) BS04 PEB ? GO:0009579 ... A0A0E3W010 28918447
    9 5nb3:C (1.38) BS01 PEB ? GO:0009579 ... A0A0E3W010 28918447
    10 5nb3:C (1.38) BS02 PEB ? GO:0009579 ... A0A0E3W010 28918447
    11 5nb3:C (1.38) BS03 PEB ? GO:0009579 ... A0A0E3W010 28918447
    12 5nb3:C (1.38) BS04 PEB ? GO:0009579 ... A0A0E3W010 28918447
    13 5nb3:D (1.38) BS01 PEB ? GO:0009579 ... A0A0E3W010 28918447
    14 5nb3:D (1.38) BS02 PEB ? GO:0009579 ... A0A0E3W010 28918447
    15 5nb3:D (1.38) BS03 PEB ? GO:0009579 ... A0A0E3W010 28918447
    16 5nb3:D (1.38) BS04 PEB ? GO:0009579 ... A0A0E3W010 28918447
    17 5nb3:E (1.38) BS01 PEB ? GO:0009579 ... A0A0E3W010 28918447
    18 5nb3:E (1.38) BS02 PEB ? GO:0009579 ... A0A0E3W010 28918447
    19 5nb3:E (1.38) BS03 PEB ? GO:0009579 ... A0A0E3W010 28918447
    20 5nb3:E (1.38) BS04 PEB ? GO:0009579 ... A0A0E3W010 28918447
    21 5nb3:F (1.38) BS01 PEB ? GO:0009579 ... A0A0E3W010 28918447
    22 5nb3:F (1.38) BS02 PEB ? GO:0009579 ... A0A0E3W010 28918447
    23 5nb3:F (1.38) BS03 PEB ? GO:0009579 ... A0A0E3W010 28918447
    24 5nb3:F (1.38) BS04 PEB ? GO:0009579 ... A0A0E3W010 28918447
    25 5nb3:G (1.38) BS01 PEB ? GO:0009579 ... A0A0E3W010 28918447
    26 5nb3:G (1.38) BS02 PEB ? GO:0009579 ... A0A0E3W010 28918447
    27 5nb3:G (1.38) BS03 PEB ? GO:0009579 ... A0A0E3W010 28918447
    28 5nb3:G (1.38) BS04 PEB ? GO:0009579 ... A0A0E3W010 28918447
    29 5nb3:H (1.38) BS01 PEB ? GO:0009579 ... A0A0E3W010 28918447
    30 5nb3:H (1.38) BS02 PEB ? GO:0009579 ... A0A0E3W010 28918447
    31 5nb3:H (1.38) BS03 PEB ? GO:0009579 ... A0A0E3W010 28918447
    32 5nb3:H (1.38) BS04 PEB ? GO:0009579 ... A0A0E3W010 28918447
    33 5nb3:I (1.38) BS01 PEB ? GO:0009579 ... A0A0E3W010 28918447
    34 5nb3:I (1.38) BS02 PEB ? GO:0009579 ... A0A0E3W010 28918447
    35 5nb3:I (1.38) BS03 PEB ? GO:0009579 ... A0A0E3W010 28918447
    36 5nb3:I (1.38) BS04 PEB ? GO:0009579 ... A0A0E3W010 28918447
    37 5nb3:J (1.38) BS01 PEB ? GO:0009579 ... A0A0E3W010 28918447
    38 5nb3:J (1.38) BS02 PEB ? GO:0009579 ... A0A0E3W010 28918447
    39 5nb3:J (1.38) BS03 PEB ? GO:0009579 ... A0A0E3W010 28918447
    40 5nb3:J (1.38) BS04 PEB ? GO:0009579 ... A0A0E3W010 28918447
    41 5nb3:K (1.38) BS01 PEB ? GO:0009579 ... A0A0E3W010 28918447
    42 5nb3:K (1.38) BS02 PEB ? GO:0009579 ... A0A0E3W010 28918447
    43 5nb3:K (1.38) BS03 PEB ? GO:0009579 ... A0A0E3W010 28918447
    44 5nb3:K (1.38) BS04 PEB ? GO:0009579 ... A0A0E3W010 28918447
    45 5nb3:L (1.38) BS01 PEB ? GO:0009579 ... A0A0E3W010 28918447
    46 5nb3:L (1.38) BS02 PEB ? GO:0009579 ... A0A0E3W010 28918447
    47 5nb3:L (1.38) BS03 PEB ? GO:0009579 ... A0A0E3W010 28918447
    48 5nb3:L (1.38) BS04 PEB ? GO:0009579 ... A0A0E3W010 28918447
    49 5nb3:M (1.38) BS01 PEB ? GO:0009579 ... A0A0E4G455 28918447
    50 5nb3:M (1.38) BS02 PEB ? GO:0009579 ... A0A0E4G455 28918447
    51 5nb3:M (1.38) BS03 PEB ? GO:0009579 ... A0A0E4G455 28918447
    52 5nb3:M (1.38) BS04 PEB ? GO:0009579 ... A0A0E4G455 28918447
    53 5nb3:N (1.38) BS01 PEB ? GO:0009579 ... A0A0E4G455 28918447
    54 5nb3:N (1.38) BS02 PEB ? GO:0009579 ... A0A0E4G455 28918447
    55 5nb3:N (1.38) BS03 PEB ? GO:0009579 ... A0A0E4G455 28918447
    56 5nb3:N (1.38) BS04 PEB ? GO:0009579 ... A0A0E4G455 28918447
    57 5nb3:O (1.38) BS01 PEB ? GO:0009579 ... A0A0E4G455 28918447
    58 5nb3:O (1.38) BS02 PEB ? GO:0009579 ... A0A0E4G455 28918447
    59 5nb3:O (1.38) BS03 PEB ? GO:0009579 ... A0A0E4G455 28918447
    60 5nb3:O (1.38) BS04 PEB ? GO:0009579 ... A0A0E4G455 28918447
    61 5nb3:P (1.38) BS01 PEB ? GO:0009579 ... A0A0E4G455 28918447
    62 5nb3:P (1.38) BS02 PEB ? GO:0009579 ... A0A0E4G455 28918447
    63 5nb3:P (1.38) BS03 PEB ? GO:0009579 ... A0A0E4G455 28918447
    64 5nb3:P (1.38) BS04 PEB ? GO:0009579 ... A0A0E4G455 28918447
    65 5nb3:Q (1.38) BS01 PEB ? GO:0009579 ... A0A0E4G455 28918447
    66 5nb3:Q (1.38) BS02 PEB ? GO:0009579 ... A0A0E4G455 28918447
    67 5nb3:Q (1.38) BS03 PEB ? GO:0009579 ... A0A0E4G455 28918447
    68 5nb3:Q (1.38) BS04 PEB ? GO:0009579 ... A0A0E4G455 28918447
    69 5nb3:R (1.38) BS01 PEB ? GO:0009579 ... A0A0E4G455 28918447
    70 5nb3:R (1.38) BS02 PEB ? GO:0009579 ... A0A0E4G455 28918447
    71 5nb3:R (1.38) BS03 PEB ? GO:0009579 ... A0A0E4G455 28918447
    72 5nb3:R (1.38) BS04 PEB ? GO:0009579 ... A0A0E4G455 28918447
    73 5nb3:S (1.38) BS01 PEB ? GO:0009579 ... A0A0E4G455 28918447
    74 5nb3:S (1.38) BS02 PEB ? GO:0009579 ... A0A0E4G455 28918447
    75 5nb3:S (1.38) BS03 PEB ? GO:0009579 ... A0A0E4G455 28918447
    76 5nb3:S (1.38) BS04 PEB ? GO:0009579 ... A0A0E4G455 28918447
    77 5nb3:T (1.38) BS01 PEB ? GO:0009579 ... A0A0E4G455 28918447
    78 5nb3:T (1.38) BS02 PEB ? GO:0009579 ... A0A0E4G455 28918447
    79 5nb3:T (1.38) BS03 PEB ? GO:0009579 ... A0A0E4G455 28918447
    80 5nb3:T (1.38) BS04 PEB ? GO:0009579 ... A0A0E4G455 28918447
    81 5nb3:U (1.38) BS01 PEB ? GO:0009579 ... A0A0E4G455 28918447
    82 5nb3:U (1.38) BS02 PEB ? GO:0009579 ... A0A0E4G455 28918447
    83 5nb3:U (1.38) BS03 PEB ? GO:0009579 ... A0A0E4G455 28918447
    84 5nb3:U (1.38) BS04 PEB ? GO:0009579 ... A0A0E4G455 28918447
    85 5nb3:V (1.38) BS01 PEB ? GO:0009579 ... A0A0E4G455 28918447
    86 5nb3:V (1.38) BS02 PEB ? GO:0009579 ... A0A0E4G455 28918447
    87 5nb3:V (1.38) BS03 PEB ? GO:0009579 ... A0A0E4G455 28918447
    88 5nb3:V (1.38) BS04 PEB ? GO:0009579 ... A0A0E4G455 28918447
    89 5nb3:W (1.38) BS01 PEB ? GO:0009579 ... A0A0E4G455 28918447
    90 5nb3:W (1.38) BS02 PEB ? GO:0009579 ... A0A0E4G455 28918447
    91 5nb3:W (1.38) BS03 PEB ? GO:0009579 ... A0A0E4G455 28918447
    92 5nb3:W (1.38) BS04 PEB ? GO:0009579 ... A0A0E4G455 28918447
    93 5nb3:X (1.38) BS01 PEB ? GO:0009579 ... A0A0E4G455 28918447
    94 5nb3:X (1.38) BS02 PEB ? GO:0009579 ... A0A0E4G455 28918447
    95 5nb3:X (1.38) BS03 PEB ? GO:0009579 ... A0A0E4G455 28918447
    96 5nb3:X (1.38) BS04 PEB ? GO:0009579 ... A0A0E4G455 28918447
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

    • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218