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BioLiP
Download all results in tab-seperated text for 60 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 5mfd:A (2.3) BS01 CA N/A N/A N/A 28691351
    2 5mfd:A (2.3) BS02 CA N/A N/A N/A 28691351
    3 5mfd:A (2.3) BS03 CA N/A N/A N/A 28691351
    4 5mfd:A (2.3) BS04 CA N/A N/A N/A 28691351
    5 5mfd:A (2.3) BS05 CA N/A N/A N/A 28691351
    6 5mfd:A (2.3) BS06 CA N/A N/A N/A 28691351
    7 5mfd:A (2.3) BS07 CA N/A N/A N/A 28691351
    8 5mfd:C (2.3) BS01 CA N/A N/A N/A 28691351
    9 5mfd:C (2.3) BS02 CA N/A N/A N/A 28691351
    10 5mfd:C (2.3) BS03 CA N/A N/A N/A 28691351
    11 5mfd:C (2.3) BS04 CA N/A N/A N/A 28691351
    12 5mfd:C (2.3) BS05 CA N/A N/A N/A 28691351
    13 5mfd:C (2.3) BS06 CA N/A N/A N/A 28691351
    14 5mfd:E (2.3) BS01 CA N/A N/A N/A 28691351
    15 5mfd:E (2.3) BS02 CA N/A N/A N/A 28691351
    16 5mfd:E (2.3) BS03 CA N/A N/A N/A 28691351
    17 5mfd:E (2.3) BS04 CA N/A N/A N/A 28691351
    18 5mfd:E (2.3) BS05 CA N/A N/A N/A 28691351
    19 5mfd:E (2.3) BS06 CA N/A N/A N/A 28691351
    20 5mfd:E (2.3) BS07 CA N/A N/A N/A 28691351
    21 5mfd:E (2.3) BS08 CA N/A N/A N/A 28691351
    22 5mfd:F (2.3) BS01 CA ? N/A P03712 28691351
    23 5mfd:G (2.3) BS01 CA N/A N/A N/A 28691351
    24 5mfd:G (2.3) BS02 CA N/A N/A N/A 28691351
    25 5mfd:G (2.3) BS03 CA N/A N/A N/A 28691351
    26 5mfd:G (2.3) BS04 CA N/A N/A N/A 28691351
    27 5mfd:G (2.3) BS05 CA N/A N/A N/A 28691351
    28 5mfd:G (2.3) BS06 CA N/A N/A N/A 28691351
    29 5mfd:G (2.3) BS07 CA N/A N/A N/A 28691351
    30 5mfd:I (2.3) BS01 CA N/A N/A N/A 28691351
    31 5mfd:I (2.3) BS02 CA N/A N/A N/A 28691351
    32 5mfd:I (2.3) BS03 CA N/A N/A N/A 28691351
    33 5mfd:I (2.3) BS04 CA N/A N/A N/A 28691351
    34 5mfd:I (2.3) BS05 CA N/A N/A N/A 28691351
    35 5mfd:I (2.3) BS06 CA N/A N/A N/A 28691351
    36 5mfd:I (2.3) BS07 CA N/A N/A N/A 28691351
    37 5mfd:I (2.3) BS08 CA N/A N/A N/A 28691351
    38 5mfd:J (2.3) BS01 CA N/A N/A N/A 28691351
    39 5mfd:J (2.3) BS02 CA N/A N/A N/A 28691351
    40 5mfd:J (2.3) BS03 CA N/A N/A N/A 28691351
    41 5mfd:J (2.3) BS04 CA N/A N/A N/A 28691351
    42 5mfd:J (2.3) BS05 CA N/A N/A N/A 28691351
    43 5mfd:J (2.3) BS06 CA N/A N/A N/A 28691351
    44 5mfd:J (2.3) BS07 CA N/A N/A N/A 28691351
    45 5mfd:J (2.3) BS08 CA N/A N/A N/A 28691351
    46 5mfd:K (2.3) BS01 CA N/A N/A N/A 28691351
    47 5mfd:K (2.3) BS02 CA N/A N/A N/A 28691351
    48 5mfd:K (2.3) BS03 CA N/A N/A N/A 28691351
    49 5mfd:K (2.3) BS04 CA N/A N/A N/A 28691351
    50 5mfd:K (2.3) BS05 CA N/A N/A N/A 28691351
    51 5mfd:K (2.3) BS06 CA N/A N/A N/A 28691351
    52 5mfd:K (2.3) BS07 CA N/A N/A N/A 28691351
    53 5mfd:K (2.3) BS08 CA N/A N/A N/A 28691351
    54 5mfd:L (2.3) BS01 CA N/A N/A N/A 28691351
    55 5mfd:L (2.3) BS02 CA N/A N/A N/A 28691351
    56 5mfd:L (2.3) BS03 CA N/A N/A N/A 28691351
    57 5mfd:L (2.3) BS04 CA N/A N/A N/A 28691351
    58 5mfd:L (2.3) BS05 CA N/A N/A N/A 28691351
    59 5mfd:L (2.3) BS06 CA N/A N/A N/A 28691351
    60 5mfd:L (2.3) BS07 CA N/A N/A N/A 28691351
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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