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BioLiP
Download all results in tab-seperated text for 117 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 5lzv:A (3.35) BS01 rna ? GO:0002181 ... G1TT27 27863242
    2 5lzv:A (3.35) BS02 rna ? GO:0002181 ... G1TT27 27863242
    3 5lzv:AA (3.35) BS01 rna N/A GO:0003735 ... N/A 27863242
    4 5lzv:B (3.35) BS01 rna ? GO:0003723 ... G1TL06 27863242
    5 5lzv:BB (3.35) BS01 rna ? GO:0003735 ... G1SS70 27863242
    6 5lzv:C (3.35) BS01 rna ? GO:0003723 ... G1SVW5 27863242
    7 5lzv:C (3.35) BS02 rna ? GO:0003723 ... G1SVW5 27863242
    8 5lzv:CC (3.35) BS01 rna N/A GO:0003723 ... N/A 27863242
    9 5lzv:D (3.35) BS01 rna ? GO:0000027 ... P19949 27863242
    10 5lzv:D (3.35) BS02 rna ? GO:0000027 ... P19949 27863242
    11 5lzv:DD (3.35) BS01 rna 4.2.99.18 GO:0003677 ... G1TNM3 27863242
    12 5lzv:E (3.35) BS01 rna ? GO:0000027 ... G1SKF7 27863242
    13 5lzv:EE (3.35) BS01 rna N/A GO:0003723 ... N/A 27863242
    14 5lzv:F (3.35) BS01 rna ? GO:0000463 ... G1TUB1 27863242
    15 5lzv:F (3.35) BS02 rna ? GO:0000463 ... G1TUB1 27863242
    16 5lzv:FF (3.35) BS01 rna ? GO:0000028 ... G1TFM5 27863242
    17 5lzv:FF (3.35) BS02 rna ? GO:0000028 ... G1TFM5 27863242
    18 5lzv:FF (3.35) BS03 MG ? GO:0000028 ... G1TFM5 27863242
    19 5lzv:G (3.35) BS01 rna ? GO:0000470 ... G1STW0 27863242
    20 5lzv:G (3.35) BS02 rna ? GO:0000470 ... G1STW0 27863242
    21 5lzv:GG (3.35) BS01 rna ? GO:0000082 ... G1TM55 27863242
    22 5lzv:H (3.35) BS01 rna ? GO:0002181 ... G1SWI6 27863242
    23 5lzv:HH (3.35) BS01 rna ? GO:0003735 ... G1SVB0 27863242
    24 5lzv:I (3.35) BS01 rna ? GO:0000027 ... B7NZQ2 27863242
    25 5lzv:I (3.35) BS02 rna ? GO:0000027 ... B7NZQ2 27863242
    26 5lzv:II (3.35) BS01 rna ? GO:0000462 ... G1TJW1 27863242
    27 5lzv:II (3.35) BS02 rna ? GO:0000462 ... G1TJW1 27863242
    28 5lzv:J (3.35) BS01 rna ? GO:0003723 ... G1TUB8 27863242
    29 5lzv:J (3.35) BS02 rna ? GO:0003723 ... G1TUB8 27863242
    30 5lzv:J (3.35) BS03 rna ? GO:0003723 ... G1TUB8 27863242
    31 5lzv:JJ (3.35) BS01 rna ? GO:0003723 ... B7NZS8 27863242
    32 5lzv:KK (3.35) BS01 rna ? GO:0003723 ... G1TPV3 27863242
    33 5lzv:L (3.35) BS01 rna N/A GO:0003735 ... N/A 27863242
    34 5lzv:L (3.35) BS02 rna N/A GO:0003735 ... N/A 27863242
    35 5lzv:LL (3.35) BS01 rna ? GO:0003735 ... G1TRM4 27863242
    36 5lzv:M (3.35) BS01 rna ? GO:0003723 ... G1SZ12 27863242
    37 5lzv:MM (3.35) BS01 rna ? GO:0003735 ... G1SFR8 27863242
    38 5lzv:N (3.35) BS01 rna ? GO:0002181 ... G1T0C1 27863242
    39 5lzv:N (3.35) BS02 rna ? GO:0002181 ... G1T0C1 27863242
    40 5lzv:NN (3.35) BS01 rna ? GO:0003735 ... G1SP51 27863242
    41 5lzv:O (3.35) BS01 rna N/A GO:0003735 ... N/A 27863242
    42 5lzv:OO (3.35) BS01 rna ? GO:0000028 ... G1T1F0 27863242
    43 5lzv:P (3.35) BS01 peptide ? GO:0002181 ... G1SCJ6 27863242
    44 5lzv:P (3.35) BS02 rna ? GO:0002181 ... G1SCJ6 27863242
    45 5lzv:P (3.35) BS03 rna ? GO:0002181 ... G1SCJ6 27863242
    46 5lzv:PP (3.35) BS01 rna ? GO:0000028 ... G1U0Q2 27863242
    47 5lzv:Q (3.35) BS01 rna N/A GO:0003735 ... N/A 27863242
    48 5lzv:QQ (3.35) BS01 rna ? GO:0000462 ... G1SGX4 27863242
    49 5lzv:R (3.35) BS01 rna N/A GO:0003723 ... N/A 27863242
    50 5lzv:R (3.35) BS02 rna N/A GO:0003723 ... N/A 27863242
    51 5lzv:RR (3.35) BS01 rna ? GO:0003735 ... G1TU13 27863242
    52 5lzv:S (3.35) BS01 rna N/A GO:0003735 ... N/A 27863242
    53 5lzv:S (3.35) BS02 rna N/A GO:0003735 ... N/A 27863242
    54 5lzv:SS (3.35) BS01 rna ? GO:0003676 ... G1TPG3 27863242
    55 5lzv:T (3.35) BS01 rna ? GO:0003735 ... G1SHQ2 27863242
    56 5lzv:T (3.35) BS02 rna ? GO:0003735 ... G1SHQ2 27863242
    57 5lzv:TT (3.35) BS01 rna ? GO:0000028 ... G1TN62 27863242
    58 5lzv:U (3.35) BS01 rna N/A GO:0003735 ... N/A 27863242
    59 5lzv:UU (3.35) BS01 rna ? GO:0003723 ... G1SIZ2 27863242
    60 5lzv:V (3.35) BS01 rna ? GO:0000122 ... G1T6D1 27863242
    61 5lzv:W (3.35) BS01 rna ? GO:0000027 ... G1SE28 27863242
    62 5lzv:WW (3.35) BS01 rna ? GO:0003735 ... G1TG89 27863242
    63 5lzv:X (3.35) BS01 rna ? GO:0000027 ... G1SE76 27863242
    64 5lzv:X (3.35) BS02 rna ? GO:0000027 ... G1SE76 27863242
    65 5lzv:XX (3.35) BS01 rna N/A GO:0003735 ... N/A 27863242
    66 5lzv:Y (3.35) BS01 rna ? GO:0002181 ... G1SQH0 27863242
    67 5lzv:Y (3.35) BS02 rna ? GO:0002181 ... G1SQH0 27863242
    68 5lzv:YY (3.35) BS01 rna N/A GO:0003735 ... N/A 27863242
    69 5lzv:Z (3.35) BS01 rna ? GO:0003735 ... G1TXF6 27863242
    70 5lzv:ZZ (3.35) BS01 rna ? GO:0003735 ... G1TDB3 27863242
    71 5lzv:a (3.35) BS01 rna ? GO:0003735 ... G1SNY0 27863242
    72 5lzv:aa (3.35) BS01 rna N/A GO:0003735 ... N/A 27863242
    73 5lzv:aa (3.35) BS02 ZN N/A GO:0003735 ... N/A 27863242
    74 5lzv:b (3.35) BS01 rna ? GO:0002181 ... G1SGR6 27863242
    75 5lzv:bb (3.35) BS01 rna ? GO:0000028 ... G1TZ76 27863242
    76 5lzv:c (3.35) BS01 rna ? GO:0002181 ... G1TDL2 27863242
    77 5lzv:cc (3.35) BS01 rna ? GO:0000028 ... G1TIB4 27863242
    78 5lzv:d (3.35) BS01 rna ? GO:0002181 ... G1SHG0 27863242
    79 5lzv:dd (3.35) BS01 rna ? GO:0003735 ... G1U7M4 27863242
    80 5lzv:dd (3.35) BS02 ZN ? GO:0003735 ... G1U7M4 27863242
    81 5lzv:e (3.35) BS01 rna ? GO:0003735 ... G1TUN8 27863242
    82 5lzv:ee (3.35) BS01 rna ? GO:0003735 ... G1T8A2 27863242
    83 5lzv:f (3.35) BS01 rna ? GO:0000049 ... G1SF08 27863242
    84 5lzv:ff (3.35) BS01 rna ? GO:0003723 ... G1SK22 27863242
    85 5lzv:ff (3.35) BS02 ZN ? GO:0003723 ... G1SK22 27863242
    86 5lzv:g (3.35) BS01 rna ? GO:0003735 ... G1TXG5 27863242
    87 5lzv:g (3.35) BS02 ZN ? GO:0003735 ... G1TXG5 27863242
    88 5lzv:g (3.35) BS03 MG ? GO:0003735 ... G1TXG5 27863242
    89 5lzv:gg (3.35) BS01 rna ? GO:0001891 ... G1SJB4 27863242
    90 5lzv:h (3.35) BS01 rna ? GO:0000463 ... G1SIT5 27863242
    91 5lzv:h (3.35) BS02 rna ? GO:0000463 ... G1SIT5 27863242
    92 5lzv:i (3.35) BS01 rna ? GO:0002181 ... G1TTQ5 27863242
    93 5lzv:ii (3.35) BS01 rna ? GO:0000184 ... P62495 27863242
    94 5lzv:ii (3.35) BS02 rna ? GO:0000184 ... P62495 27863242
    95 5lzv:ii (3.35) BS03 rna ? GO:0000184 ... P62495 27863242
    96 5lzv:ii (3.35) BS04 rna ? GO:0000184 ... P62495 27863242
    97 5lzv:j (3.35) BS01 rna ? GO:0003723 ... U3KPD5 27863242
    98 5lzv:j (3.35) BS02 rna ? GO:0003723 ... U3KPD5 27863242
    99 5lzv:j (3.35) BS03 ZN ? GO:0003723 ... U3KPD5 27863242
    100 5lzv:jj (3.35) BS01 rna ? GO:0000054 ... G1SG72 27863242
    101 5lzv:jj (3.35) BS02 rna ? GO:0000054 ... G1SG72 27863242
    102 5lzv:jj (3.35) BS03 SF4 ? GO:0000054 ... G1SG72 27863242
    103 5lzv:jj (3.35) BS04 SF4 ? GO:0000054 ... G1SG72 27863242
    104 5lzv:k (3.35) BS01 rna N/A GO:0003735 ... N/A 27863242
    105 5lzv:l (3.35) BS01 rna ? GO:0003735 ... G1TTN1 27863242
    106 5lzv:l (3.35) BS02 rna ? GO:0003735 ... G1TTN1 27863242
    107 5lzv:m (3.35) BS01 rna N/A GO:0003735 ... N/A 27863242
    108 5lzv:m (3.35) BS02 ZN N/A GO:0003735 ... N/A 27863242
    109 5lzv:o (3.35) BS01 rna ? GO:0003735 ... G1T040 27863242
    110 5lzv:o (3.35) BS02 rna ? GO:0003735 ... G1T040 27863242
    111 5lzv:o (3.35) BS03 rna ? GO:0003735 ... G1T040 27863242
    112 5lzv:o (3.35) BS04 ZN ? GO:0003735 ... G1T040 27863242
    113 5lzv:p (3.35) BS01 rna ? GO:0003735 ... G1SY53 27863242
    114 5lzv:p (3.35) BS02 ZN ? GO:0003735 ... G1SY53 27863242
    115 5lzv:r (3.35) BS01 rna ? GO:0003735 ... G1U7L1 27863242
    116 5lzv:s (3.35) BS01 rna N/A GO:0042254 ... N/A 27863242
    117 5lzv:t (3.35) BS01 rna ? GO:0003723 ... G1SMR7 27863242
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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