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BioLiP
Download all results in tab-seperated text for 43 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 5ls6:A (3.47) BS01 peptide 2.1.1.356 GO:0006338 ... Q15910 27739677
    2 5ls6:A (3.47) BS02 ZN 2.1.1.356 GO:0006338 ... Q15910 27739677
    3 5ls6:A (3.47) BS03 ZN 2.1.1.356 GO:0006338 ... Q15910 27739677
    4 5ls6:A (3.47) BS04 ZN 2.1.1.356 GO:0006338 ... Q15910 27739677
    5 5ls6:A (3.47) BS05 ZN 2.1.1.356 GO:0006338 ... Q15910 27739677
    6 5ls6:A (3.47) BS06 ZN 2.1.1.356 GO:0006338 ... Q15910 27739677
    7 5ls6:A (3.47) BS07 ZN 2.1.1.356 GO:0006338 ... Q15910 27739677
    8 5ls6:A (3.47) BS08 ZN 2.1.1.356 GO:0006338 ... Q15910 27739677
    9 5ls6:A (3.47) BS09 ZN 2.1.1.356 GO:0006338 ... Q15910 27739677
    10 5ls6:A (3.47) BS10 74D 2.1.1.356 GO:0006338 ... Q15910 27739677 PDBbind: -logKd/Ki=9.00, IC50<0.001uM
    11 5ls6:B (3.47) BS01 peptide ? N/A O75530 27739677
    12 5ls6:D (3.47) BS01 ZN 2.1.1.356 GO:0006338 ... Q15910 27739677
    13 5ls6:D (3.47) BS02 ZN 2.1.1.356 GO:0006338 ... Q15910 27739677
    14 5ls6:D (3.47) BS03 ZN 2.1.1.356 GO:0006338 ... Q15910 27739677
    15 5ls6:D (3.47) BS04 ZN 2.1.1.356 GO:0006338 ... Q15910 27739677
    16 5ls6:D (3.47) BS05 ZN 2.1.1.356 GO:0006338 ... Q15910 27739677
    17 5ls6:D (3.47) BS06 ZN 2.1.1.356 GO:0006338 ... Q15910 27739677
    18 5ls6:D (3.47) BS07 ZN 2.1.1.356 GO:0006338 ... Q15910 27739677
    19 5ls6:D (3.47) BS08 ZN 2.1.1.356 GO:0006338 ... Q15910 27739677
    20 5ls6:D (3.47) BS09 74D 2.1.1.356 GO:0006338 ... Q15910 27739677
    21 5ls6:E (3.47) BS01 peptide ? N/A O75530 27739677
    22 5ls6:G (3.47) BS01 peptide 2.1.1.356 GO:0006338 ... Q15910 27739677
    23 5ls6:G (3.47) BS02 ZN 2.1.1.356 GO:0006338 ... Q15910 27739677
    24 5ls6:G (3.47) BS03 ZN 2.1.1.356 GO:0006338 ... Q15910 27739677
    25 5ls6:G (3.47) BS04 ZN 2.1.1.356 GO:0006338 ... Q15910 27739677
    26 5ls6:G (3.47) BS05 ZN 2.1.1.356 GO:0006338 ... Q15910 27739677
    27 5ls6:G (3.47) BS06 ZN 2.1.1.356 GO:0006338 ... Q15910 27739677
    28 5ls6:G (3.47) BS07 ZN 2.1.1.356 GO:0006338 ... Q15910 27739677
    29 5ls6:G (3.47) BS08 ZN 2.1.1.356 GO:0006338 ... Q15910 27739677
    30 5ls6:G (3.47) BS09 ZN 2.1.1.356 GO:0006338 ... Q15910 27739677
    31 5ls6:G (3.47) BS10 74D 2.1.1.356 GO:0006338 ... Q15910 27739677
    32 5ls6:H (3.47) BS01 peptide ? N/A O75530 27739677
    33 5ls6:J (3.47) BS01 peptide 2.1.1.356 GO:0006338 ... Q15910 27739677
    34 5ls6:J (3.47) BS02 ZN 2.1.1.356 GO:0006338 ... Q15910 27739677
    35 5ls6:J (3.47) BS03 ZN 2.1.1.356 GO:0006338 ... Q15910 27739677
    36 5ls6:J (3.47) BS04 ZN 2.1.1.356 GO:0006338 ... Q15910 27739677
    37 5ls6:J (3.47) BS05 ZN 2.1.1.356 GO:0006338 ... Q15910 27739677
    38 5ls6:J (3.47) BS06 ZN 2.1.1.356 GO:0006338 ... Q15910 27739677
    39 5ls6:J (3.47) BS07 ZN 2.1.1.356 GO:0006338 ... Q15910 27739677
    40 5ls6:J (3.47) BS08 ZN 2.1.1.356 GO:0006338 ... Q15910 27739677
    41 5ls6:J (3.47) BS09 ZN 2.1.1.356 GO:0006338 ... Q15910 27739677
    42 5ls6:J (3.47) BS10 74D 2.1.1.356 GO:0006338 ... Q15910 27739677
    43 5ls6:K (3.47) BS01 peptide ? N/A O75530 27739677
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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