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BioLiP
Download all results in tab-seperated text for 32 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 5jvh:1 (3.58) BS01 rna ? GO:0000049 ... Q9RSS4 27791159
    2 5jvh:2 (3.58) BS01 rna ? GO:0003735 ... Q9RSH2 27791159
    3 5jvh:3 (3.58) BS01 rna ? GO:0003735 ... Q9RSW6 27791159
    4 5jvh:A (3.58) BS01 rna ? GO:0002181 ... Q9RXJ9 27791159
    5 5jvh:B (3.58) BS01 rna ? GO:0003735 ... Q9RXK2 27791159
    6 5jvh:C (3.58) BS01 rna ? GO:0003735 ... Q9RXK1 27791159
    7 5jvh:D (3.58) BS01 rna ? GO:0000049 ... Q9RXJ0 27791159
    8 5jvh:D (3.58) BS02 rna ? GO:0000049 ... Q9RXJ0 27791159
    9 5jvh:E (3.58) BS01 rna ? GO:0002181 ... Q9RSL3 27791159
    10 5jvh:G (3.58) BS01 rna ? GO:0003729 ... Q9RXY1 27791159
    11 5jvh:H (3.58) BS01 rna ? GO:0003735 ... Q9RXJ2 27791159
    12 5jvh:I (3.58) BS01 rna ? GO:0003735 ... Q9RSK9 27791159
    13 5jvh:J (3.58) BS01 rna ? GO:0000049 ... Q9RXJ5 27791159
    14 5jvh:J (3.58) BS02 rna ? GO:0000049 ... Q9RXJ5 27791159
    15 5jvh:J (3.58) BS03 6O1 ? GO:0000049 ... Q9RXJ5 27791159
    16 5jvh:K (3.58) BS01 rna ? GO:0003735 ... Q9RSJ5 27791159
    17 5jvh:L (3.58) BS01 rna ? GO:0003735 ... Q9RSL2 27791159
    18 5jvh:L (3.58) BS02 rna ? GO:0003735 ... Q9RSL2 27791159
    19 5jvh:M (3.58) BS01 rna ? GO:0003735 ... Q9RWB4 27791159
    20 5jvh:N (3.58) BS01 rna ? GO:0000027 ... Q9RSW7 27791159
    21 5jvh:O (3.58) BS01 rna ? GO:0003723 ... Q9RY64 27791159
    22 5jvh:P (3.58) BS01 rna ? GO:0003735 ... Q9RXJ7 27791159
    23 5jvh:Q (3.58) BS01 rna ? GO:0000027 ... Q9RXK0 27791159
    24 5jvh:R (3.58) BS01 rna ? GO:0003723 ... Q9RXJ1 27791159
    25 5jvh:S (3.58) BS01 rna ? GO:0000049 ... Q9RX88 27791159
    26 5jvh:S (3.58) BS02 rna ? GO:0000049 ... Q9RX88 27791159
    27 5jvh:T (3.58) BS01 rna ? GO:0000049 ... Q9RY65 27791159
    28 5jvh:U (3.58) BS01 rna ? GO:0003735 ... Q9RRG8 27791159
    29 5jvh:V (3.58) BS01 rna ? GO:0003735 ... Q9RXJ4 27791159
    30 5jvh:W (3.58) BS01 rna ? GO:0003735 ... Q9RSL0 27791159
    31 5jvh:W (3.58) BS02 rna ? GO:0003735 ... Q9RSL0 27791159
    32 5jvh:Z (3.58) BS01 rna ? GO:0003735 ... P49228 27791159
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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