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BioLiP
Download all results in tab-seperated text for 39 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 5gaf:C (4.3) BS01 rna ? GO:0000027 ... P60422 26804923
    2 5gaf:D (4.3) BS01 rna ? GO:0000027 ... P60438 26804923
    3 5gaf:E (4.3) BS01 rna ? GO:0001070 ... P60723 26804923
    4 5gaf:F (4.3) BS01 rna ? GO:0000027 ... P62399 26804923
    5 5gaf:F (4.3) BS02 rna ? GO:0000027 ... P62399 26804923
    6 5gaf:G (4.3) BS01 rna ? GO:0000027 ... P0AG55 26804923
    7 5gaf:H (4.3) BS01 rna ? GO:0002181 ... P0A7R1 26804923
    8 5gaf:I (4.3) BS01 rna ? GO:0003735 ... P0A7J3 26804923
    9 5gaf:J (4.3) BS01 rna ? GO:0000027 ... P0A7J7 26804923
    10 5gaf:K (4.3) BS01 rna ? GO:0002181 ... P0AA10 26804923
    11 5gaf:L (4.3) BS01 rna ? GO:0002181 ... P0ADY3 26804923
    12 5gaf:M (4.3) BS01 rna ? GO:0002181 ... P02413 26804923
    13 5gaf:N (4.3) BS01 rna ? GO:0000027 ... P0ADY7 26804923
    14 5gaf:N (4.3) BS02 rna ? GO:0000027 ... P0ADY7 26804923
    15 5gaf:O (4.3) BS01 rna ? GO:0000027 ... P0AG44 26804923
    16 5gaf:P (4.3) BS01 rna ? GO:0002181 ... P0C018 26804923
    17 5gaf:P (4.3) BS02 rna ? GO:0002181 ... P0C018 26804923
    18 5gaf:Q (4.3) BS01 rna ? GO:0000027 ... P0A7K6 26804923
    19 5gaf:R (4.3) BS01 rna ? GO:0000027 ... P0A7L3 26804923
    20 5gaf:S (4.3) BS01 rna ? GO:0002181 ... P0AG48 26804923
    21 5gaf:T (4.3) BS01 rna ? GO:0002181 ... P61175 26804923
    22 5gaf:U (4.3) BS01 rna ? GO:0000027 ... P0ADZ0 26804923
    23 5gaf:V (4.3) BS01 rna ? GO:0000027 ... P60624 26804923
    24 5gaf:W (4.3) BS01 rna ? GO:0000027 ... P68919 26804923
    25 5gaf:X (4.3) BS01 rna ? GO:0003735 ... P0A7L8 26804923
    26 5gaf:X (4.3) BS02 rna ? GO:0003735 ... P0A7L8 26804923
    27 5gaf:Y (4.3) BS01 rna ? GO:0000027 ... P0A7M2 26804923
    28 5gaf:Z (4.3) BS01 rna ? GO:0000027 ... P0A7M6 26804923
    29 5gaf:a (4.3) BS01 rna ? GO:0000027 ... P0AG51 26804923
    30 5gaf:b (4.3) BS01 rna ? GO:0000027 ... P0A7N4 26804923
    31 5gaf:c (4.3) BS01 rna ? GO:0000027 ... P0A7N9 26804923
    32 5gaf:d (4.3) BS01 rna ? GO:0002181 ... P0A7P5 26804923
    33 5gaf:e (4.3) BS01 rna ? GO:0002181 ... P0A7Q1 26804923
    34 5gaf:f (4.3) BS01 rna ? GO:0002181 ... P0A7Q6 26804923
    35 5gaf:f (4.3) BS02 ZN ? GO:0002181 ... P0A7Q6 26804923
    36 5gaf:i (4.3) BS01 rna 3.6.5.4 GO:0003924 ... P0AGD7 26804923
    37 5gaf:i (4.3) BS02 rna 3.6.5.4 GO:0003924 ... P0AGD7 26804923
    38 5gaf:i (4.3) BS03 peptide 3.6.5.4 GO:0003924 ... P0AGD7 26804923
    39 5gaf:i (4.3) BS04 GNP 3.6.5.4 GO:0003924 ... P0AGD7 26804923
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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