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BioLiP
Download all results in tab-seperated text for 42 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 5gad:C (3.7) BS01 rna ? GO:0000027 ... P60422 26804923
    2 5gad:D (3.7) BS01 rna ? GO:0000027 ... P60438 26804923
    3 5gad:E (3.7) BS01 rna ? GO:0001070 ... P60723 26804923
    4 5gad:F (3.7) BS01 rna ? GO:0000027 ... P62399 26804923
    5 5gad:F (3.7) BS02 rna ? GO:0000027 ... P62399 26804923
    6 5gad:G (3.7) BS01 rna ? GO:0000027 ... P0AG55 26804923
    7 5gad:H (3.7) BS01 rna ? GO:0002181 ... P0A7R1 26804923
    8 5gad:I (3.7) BS01 rna ? GO:0002181 ... P0A7J3 26804923
    9 5gad:J (3.7) BS01 rna ? GO:0000027 ... P0A7J7 26804923
    10 5gad:K (3.7) BS01 rna ? GO:0002181 ... P0AA10 26804923
    11 5gad:L (3.7) BS01 rna ? GO:0002181 ... P0ADY3 26804923
    12 5gad:M (3.7) BS01 rna ? GO:0002181 ... P02413 26804923
    13 5gad:N (3.7) BS01 rna ? GO:0000027 ... P0ADY7 26804923
    14 5gad:N (3.7) BS02 rna ? GO:0000027 ... P0ADY7 26804923
    15 5gad:O (3.7) BS01 rna ? GO:0000027 ... P0AG44 26804923
    16 5gad:P (3.7) BS01 rna ? GO:0002181 ... P0C018 26804923
    17 5gad:P (3.7) BS02 rna ? GO:0002181 ... P0C018 26804923
    18 5gad:Q (3.7) BS01 rna ? GO:0000027 ... P0A7K6 26804923
    19 5gad:R (3.7) BS01 rna ? GO:0000027 ... P0A7L3 26804923
    20 5gad:S (3.7) BS01 rna ? GO:0002181 ... P0AG48 26804923
    21 5gad:T (3.7) BS01 rna ? GO:0002181 ... P61175 26804923
    22 5gad:U (3.7) BS01 rna ? GO:0000027 ... P0ADZ0 26804923
    23 5gad:V (3.7) BS01 rna ? GO:0000027 ... P60624 26804923
    24 5gad:W (3.7) BS01 rna ? GO:0000027 ... P68919 26804923
    25 5gad:X (3.7) BS01 rna ? GO:0000027 ... P0A7L8 26804923
    26 5gad:X (3.7) BS02 rna ? GO:0000027 ... P0A7L8 26804923
    27 5gad:Y (3.7) BS01 rna ? GO:0000027 ... P0A7M2 26804923
    28 5gad:Z (3.7) BS01 rna ? GO:0000027 ... P0A7M6 26804923
    29 5gad:a (3.7) BS01 rna ? GO:0000027 ... P0AG51 26804923
    30 5gad:b (3.7) BS01 rna ? GO:0000027 ... P0A7N4 26804923
    31 5gad:c (3.7) BS01 rna ? GO:0000027 ... P0A7N9 26804923
    32 5gad:d (3.7) BS01 rna ? GO:0002181 ... P0A7P5 26804923
    33 5gad:e (3.7) BS01 rna ? GO:0002181 ... P0A7Q1 26804923
    34 5gad:f (3.7) BS01 rna ? GO:0002181 ... P0A7Q6 26804923
    35 5gad:f (3.7) BS02 ZN ? GO:0002181 ... P0A7Q6 26804923
    36 5gad:i (3.7) BS01 rna 3.6.5.4 GO:0003723 ... P0AGD7 26804923
    37 5gad:i (3.7) BS02 rna 3.6.5.4 GO:0003723 ... P0AGD7 26804923
    38 5gad:i (3.7) BS03 peptide 3.6.5.4 GO:0003723 ... P0AGD7 26804923
    39 5gad:i (3.7) BS04 GNP 3.6.5.4 GO:0003723 ... P0AGD7 26804923
    40 5gad:l (3.7) BS01 rna 3.6.5.4 GO:0003924 ... P10121 26804923
    41 5gad:l (3.7) BS02 GNP 3.6.5.4 GO:0003924 ... P10121 26804923
    42 5gad:l (3.7) BS03 GNP 3.6.5.4 GO:0003924 ... P10121 26804923
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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