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BioLiP
Download all results in tab-seperated text for 22 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 4yy3:B (3.6) BS01 rna ? GO:0003735 ... P80371 27307497
    2 4yy3:B (3.6) BS02 MG ? GO:0003735 ... P80371 27307497
    3 4yy3:C (3.6) BS01 rna ? GO:0003676 ... P80372 27307497
    4 4yy3:D (3.6) BS01 rna ? GO:0003723 ... P80373 27307497
    5 4yy3:E (3.6) BS01 rna ? GO:0003723 ... Q5SHQ5 27307497
    6 4yy3:F (3.6) BS01 rna ? GO:0003735 ... Q5SLP8 27307497
    7 4yy3:G (3.6) BS01 rna ? GO:0000028 ... P17291 27307497
    8 4yy3:H (3.6) BS01 rna ? GO:0003735 ... P0DOY9 27307497
    9 4yy3:I (3.6) BS01 rna ? GO:0000049 ... P80374 27307497
    10 4yy3:J (3.6) BS01 rna ? GO:0000049 ... Q5SHN7 27307497
    11 4yy3:K (3.6) BS01 rna ? GO:0003735 ... P80376 27307497
    12 4yy3:L (3.6) BS01 rna ? GO:0000049 ... Q5SHN3 27307497
    13 4yy3:M (3.6) BS01 rna ? GO:0000049 ... P80377 27307497
    14 4yy3:N (3.6) BS01 rna ? GO:0003735 ... P0DOY6 27307497
    15 4yy3:N (3.6) BS02 ZN ? GO:0003735 ... P0DOY6 27307497
    16 4yy3:O (3.6) BS01 rna ? GO:0003735 ... Q5SJ76 27307497
    17 4yy3:P (3.6) BS01 rna ? GO:0003735 ... Q5SJH3 27307497
    18 4yy3:Q (3.6) BS01 rna ? GO:0003735 ... P0DOY7 27307497
    19 4yy3:R (3.6) BS01 rna ? GO:0003735 ... Q5SLQ0 27307497
    20 4yy3:S (3.6) BS01 rna ? GO:0000028 ... Q5SHP2 27307497
    21 4yy3:T (3.6) BS01 rna ? GO:0003723 ... P80380 27307497
    22 4yy3:Y (3.6) BS01 rna 3.1.-.- GO:0003723 ... Q7A225 27307497
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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