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BioLiP
Download all results in tab-seperated text for 131 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 4v9i:AB (3.3) BS01 rna ? GO:0003735 ... P80371 23812587
    2 4v9i:AC (3.3) BS01 rna ? GO:0003676 ... P80372 23812587
    3 4v9i:AD (3.3) BS01 rna ? GO:0003723 ... P80373 23812587
    4 4v9i:AE (3.3) BS01 rna ? GO:0003723 ... Q5SHQ5 23812587
    5 4v9i:AF (3.3) BS01 rna ? GO:0003735 ... Q5SLP8 23812587
    6 4v9i:AG (3.3) BS01 rna ? GO:0000028 ... P17291 23812587
    7 4v9i:AG (3.3) BS02 rna ? GO:0000028 ... P17291 23812587
    8 4v9i:AH (3.3) BS01 rna N/A GO:0003735 ... N/A 23812587
    9 4v9i:AI (3.3) BS01 rna ? GO:0000049 ... P80374 23812587
    10 4v9i:AJ (3.3) BS01 rna ? GO:0000049 ... Q5SHN7 23812587
    11 4v9i:AK (3.3) BS01 rna ? GO:0003735 ... P80376 23812587
    12 4v9i:AL (3.3) BS01 rna ? GO:0000049 ... Q5SHN3 23812587
    13 4v9i:AM (3.3) BS01 rna ? GO:0000049 ... P80377 23812587
    14 4v9i:AM (3.3) BS02 rna ? GO:0000049 ... P80377 23812587
    15 4v9i:AM (3.3) BS03 rna ? GO:0000049 ... P80377 23812587
    16 4v9i:AN (3.3) BS01 rna N/A GO:0003735 ... N/A 23812587
    17 4v9i:AO (3.3) BS01 rna ? GO:0003735 ... Q5SJ76 23812587
    18 4v9i:AO (3.3) BS02 rna ? GO:0003735 ... Q5SJ76 23812587
    19 4v9i:AP (3.3) BS01 rna ? GO:0003735 ... Q5SJH3 23812587
    20 4v9i:AQ (3.3) BS01 rna N/A GO:0003735 ... N/A 23812587
    21 4v9i:AR (3.3) BS01 rna ? GO:0003735 ... Q5SLQ0 23812587
    22 4v9i:AS (3.3) BS01 rna ? GO:0003723 ... Q5SHP2 23812587
    23 4v9i:AT (3.3) BS01 rna ? GO:0003723 ... P80380 23812587
    24 4v9i:B0 (3.3) BS01 rna ? GO:0003735 ... P60493 23812587
    25 4v9i:B0 (3.3) BS02 rna ? GO:0003735 ... P60493 23812587
    26 4v9i:B0 (3.3) BS03 rna ? GO:0003735 ... P60493 23812587
    27 4v9i:B1 (3.3) BS01 rna ? GO:0003735 ... P60494 23812587
    28 4v9i:B2 (3.3) BS01 rna ? GO:0003735 ... Q5SHP6 23812587
    29 4v9i:B3 (3.3) BS01 rna ? GO:0003735 ... Q5SHQ6 23812587
    30 4v9i:B3 (3.3) BS02 rna ? GO:0003735 ... Q5SHQ6 23812587
    31 4v9i:B5 (3.3) BS01 rna ? GO:0003735 ... P80339 23812587
    32 4v9i:B6 (3.3) BS01 rna ? GO:0003735 ... P35871 23812587
    33 4v9i:B7 (3.3) BS01 rna ? GO:0003735 ... P80340 23812587
    34 4v9i:B8 (3.3) BS01 rna ? GO:0003735 ... Q5SKU1 23812587
    35 4v9i:B9 (3.3) BS01 rna ? GO:0003735 ... Q5SHR2 23812587
    36 4v9i:BC (3.3) BS01 rna N/A GO:0005506 ... N/A 23812587
    37 4v9i:BD (3.3) BS01 rna ? GO:0002181 ... P60405 23812587
    38 4v9i:BE (3.3) BS01 rna ? GO:0003735 ... Q5SHN8 23812587
    39 4v9i:BF (3.3) BS01 rna ? GO:0003735 ... Q5SHN9 23812587
    40 4v9i:BG (3.3) BS01 rna ? GO:0000049 ... Q5SHQ0 23812587
    41 4v9i:BG (3.3) BS02 rna ? GO:0000049 ... Q5SHQ0 23812587
    42 4v9i:BG (3.3) BS03 rna ? GO:0000049 ... Q5SHQ0 23812587
    43 4v9i:BH (3.3) BS01 rna N/A GO:0003735 ... N/A 23812587
    44 4v9i:BI (3.3) BS01 rna ? GO:0003735 ... Q5SLQ1 23812587
    45 4v9i:BI (3.3) BS02 rna ? GO:0003735 ... Q5SLQ1 23812587
    46 4v9i:BJ (3.3) BS01 rna N/A GO:0050825 ... N/A 23812587
    47 4v9i:BN (3.3) BS01 rna ? GO:0003729 ... P60488 23812587
    48 4v9i:BO (3.3) BS01 rna ? GO:0003735 ... Q5SHP8 23812587
    49 4v9i:BO (3.3) BS02 rna ? GO:0003735 ... Q5SHP8 23812587
    50 4v9i:BP (3.3) BS01 rna ? GO:0003735 ... Q5SHQ7 23812587
    51 4v9i:BQ (3.3) BS01 rna ? GO:0000049 ... P60489 23812587
    52 4v9i:BQ (3.3) BS02 rna ? GO:0000049 ... P60489 23812587
    53 4v9i:BQ (3.3) BS03 rna ? GO:0000049 ... P60489 23812587
    54 4v9i:BR (3.3) BS01 rna ? GO:0003735 ... Q9Z9H5 23812587
    55 4v9i:BS (3.3) BS01 rna ? GO:0003735 ... Q5SHQ4 23812587
    56 4v9i:BS (3.3) BS02 rna ? GO:0003735 ... Q5SHQ4 23812587
    57 4v9i:BT (3.3) BS01 rna ? GO:0003735 ... P60490 23812587
    58 4v9i:BT (3.3) BS02 rna ? GO:0003735 ... P60490 23812587
    59 4v9i:BU (3.3) BS01 rna ? GO:0000027 ... P60491 23812587
    60 4v9i:BV (3.3) BS01 rna ? GO:0003723 ... P60492 23812587
    61 4v9i:BW (3.3) BS01 rna ? GO:0003735 ... Q5SHP3 23812587
    62 4v9i:BX (3.3) BS01 rna ? GO:0000027 ... Q5SHP0 23812587
    63 4v9i:BY (3.3) BS01 rna ? GO:0003723 ... Q5SHP9 23812587
    64 4v9i:BZ (3.3) BS01 rna ? GO:0003735 ... Q5SHZ1 23812587
    65 4v9i:BZ (3.3) BS02 rna ? GO:0003735 ... Q5SHZ1 23812587
    66 4v9i:CB (3.3) BS01 rna ? GO:0003735 ... P80371 23812587
    67 4v9i:CC (3.3) BS01 rna ? GO:0003676 ... P80372 23812587
    68 4v9i:CD (3.3) BS01 rna ? GO:0003723 ... P80373 23812587
    69 4v9i:CE (3.3) BS01 rna ? GO:0003723 ... Q5SHQ5 23812587
    70 4v9i:CF (3.3) BS01 rna ? GO:0003735 ... Q5SLP8 23812587
    71 4v9i:CG (3.3) BS01 rna ? GO:0000028 ... P17291 23812587
    72 4v9i:CG (3.3) BS02 rna ? GO:0000028 ... P17291 23812587
    73 4v9i:CH (3.3) BS01 rna N/A GO:0003735 ... N/A 23812587
    74 4v9i:CI (3.3) BS01 rna ? GO:0000049 ... P80374 23812587
    75 4v9i:CJ (3.3) BS01 rna ? GO:0000049 ... Q5SHN7 23812587
    76 4v9i:CK (3.3) BS01 rna ? GO:0003735 ... P80376 23812587
    77 4v9i:CL (3.3) BS01 rna ? GO:0000049 ... Q5SHN3 23812587
    78 4v9i:CM (3.3) BS01 rna ? GO:0000049 ... P80377 23812587
    79 4v9i:CM (3.3) BS02 rna ? GO:0000049 ... P80377 23812587
    80 4v9i:CM (3.3) BS03 rna ? GO:0000049 ... P80377 23812587
    81 4v9i:CM (3.3) BS04 rna ? GO:0000049 ... P80377 23812587
    82 4v9i:CN (3.3) BS01 rna N/A GO:0003735 ... N/A 23812587
    83 4v9i:CO (3.3) BS01 rna ? GO:0003735 ... Q5SJ76 23812587
    84 4v9i:CO (3.3) BS02 rna ? GO:0003735 ... Q5SJ76 23812587
    85 4v9i:CP (3.3) BS01 rna ? GO:0003735 ... Q5SJH3 23812587
    86 4v9i:CQ (3.3) BS01 rna N/A GO:0003735 ... N/A 23812587
    87 4v9i:CR (3.3) BS01 rna ? GO:0003735 ... Q5SLQ0 23812587
    88 4v9i:CS (3.3) BS01 rna ? GO:0003723 ... Q5SHP2 23812587
    89 4v9i:CT (3.3) BS01 rna ? GO:0003723 ... P80380 23812587
    90 4v9i:D0 (3.3) BS01 rna ? GO:0003735 ... P60493 23812587
    91 4v9i:D0 (3.3) BS02 rna ? GO:0003735 ... P60493 23812587
    92 4v9i:D1 (3.3) BS01 rna ? GO:0003735 ... P60494 23812587
    93 4v9i:D2 (3.3) BS01 rna ? GO:0003735 ... Q5SHP6 23812587
    94 4v9i:D3 (3.3) BS01 rna ? GO:0003735 ... Q5SHQ6 23812587
    95 4v9i:D3 (3.3) BS02 rna ? GO:0003735 ... Q5SHQ6 23812587
    96 4v9i:D5 (3.3) BS01 rna ? GO:0003735 ... P80339 23812587
    97 4v9i:D6 (3.3) BS01 rna ? GO:0003735 ... P35871 23812587
    98 4v9i:D7 (3.3) BS01 rna ? GO:0003735 ... P80340 23812587
    99 4v9i:D8 (3.3) BS01 rna ? GO:0003735 ... Q5SKU1 23812587
    100 4v9i:D9 (3.3) BS01 rna ? GO:0003735 ... Q5SHR2 23812587
    101 4v9i:DC (3.3) BS01 rna N/A GO:0005506 ... N/A 23812587
    102 4v9i:DD (3.3) BS01 rna ? GO:0002181 ... P60405 23812587
    103 4v9i:DD (3.3) BS02 rna ? GO:0002181 ... P60405 23812587
    104 4v9i:DE (3.3) BS01 rna ? GO:0003735 ... Q5SHN8 23812587
    105 4v9i:DF (3.3) BS01 rna ? GO:0003735 ... Q5SHN9 23812587
    106 4v9i:DG (3.3) BS01 rna ? GO:0000049 ... Q5SHQ0 23812587
    107 4v9i:DG (3.3) BS02 rna ? GO:0000049 ... Q5SHQ0 23812587
    108 4v9i:DG (3.3) BS03 rna ? GO:0000049 ... Q5SHQ0 23812587
    109 4v9i:DH (3.3) BS01 rna N/A GO:0003735 ... N/A 23812587
    110 4v9i:DI (3.3) BS01 rna ? GO:0003735 ... Q5SLQ1 23812587
    111 4v9i:DJ (3.3) BS01 rna N/A GO:0050825 ... N/A 23812587
    112 4v9i:DN (3.3) BS01 rna ? GO:0003729 ... P60488 23812587
    113 4v9i:DO (3.3) BS01 rna ? GO:0003735 ... Q5SHP8 23812587
    114 4v9i:DO (3.3) BS02 rna ? GO:0003735 ... Q5SHP8 23812587
    115 4v9i:DP (3.3) BS01 rna ? GO:0003735 ... Q5SHQ7 23812587
    116 4v9i:DQ (3.3) BS01 rna ? GO:0000049 ... P60489 23812587
    117 4v9i:DQ (3.3) BS02 rna ? GO:0000049 ... P60489 23812587
    118 4v9i:DQ (3.3) BS03 rna ? GO:0000049 ... P60489 23812587
    119 4v9i:DQ (3.3) BS04 rna ? GO:0000049 ... P60489 23812587
    120 4v9i:DR (3.3) BS01 rna ? GO:0003735 ... Q9Z9H5 23812587
    121 4v9i:DS (3.3) BS01 rna ? GO:0003735 ... Q5SHQ4 23812587
    122 4v9i:DS (3.3) BS02 rna ? GO:0003735 ... Q5SHQ4 23812587
    123 4v9i:DT (3.3) BS01 rna ? GO:0003735 ... P60490 23812587
    124 4v9i:DT (3.3) BS02 rna ? GO:0003735 ... P60490 23812587
    125 4v9i:DU (3.3) BS01 rna ? GO:0000027 ... P60491 23812587
    126 4v9i:DV (3.3) BS01 rna ? GO:0003723 ... P60492 23812587
    127 4v9i:DW (3.3) BS01 rna ? GO:0003735 ... Q5SHP3 23812587
    128 4v9i:DX (3.3) BS01 rna ? GO:0000027 ... Q5SHP0 23812587
    129 4v9i:DY (3.3) BS01 rna ? GO:0003723 ... Q5SHP9 23812587
    130 4v9i:DZ (3.3) BS01 rna ? GO:0003735 ... Q5SHZ1 23812587
    131 4v9i:DZ (3.3) BS02 rna ? GO:0003735 ... Q5SHZ1 23812587
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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