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BioLiP
Download all results in tab-seperated text for 68 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 4v9h:AB (2.857) BS01 rna ? GO:0003735 ... P80371 23812720
    2 4v9h:AC (2.857) BS01 rna ? GO:0003676 ... P80372 23812720
    3 4v9h:AD (2.857) BS01 rna ? GO:0003723 ... P80373 23812720
    4 4v9h:AE (2.857) BS01 rna ? GO:0003723 ... Q5SHQ5 23812720
    5 4v9h:AF (2.857) BS01 rna ? GO:0003735 ... Q5SLP8 23812720
    6 4v9h:AG (2.857) BS01 rna ? GO:0000028 ... P17291 23812720
    7 4v9h:AG (2.857) BS02 rna ? GO:0000028 ... P17291 23812720
    8 4v9h:AH (2.857) BS01 rna N/A GO:0003735 ... N/A 23812720
    9 4v9h:AI (2.857) BS01 rna ? GO:0000049 ... P80374 23812720
    10 4v9h:AI (2.857) BS02 rna ? GO:0000049 ... P80374 23812720
    11 4v9h:AJ (2.857) BS01 rna ? GO:0000049 ... Q5SHN7 23812720
    12 4v9h:AK (2.857) BS01 rna ? GO:0003735 ... P80376 23812720
    13 4v9h:AL (2.857) BS01 rna ? GO:0000049 ... Q5SHN3 23812720
    14 4v9h:AM (2.857) BS01 rna ? GO:0000049 ... P80377 23812720
    15 4v9h:AN (2.857) BS01 rna N/A GO:0003735 ... N/A 23812720
    16 4v9h:AO (2.857) BS01 rna ? GO:0003735 ... Q5SJ76 23812720
    17 4v9h:AO (2.857) BS02 rna ? GO:0003735 ... Q5SJ76 23812720
    18 4v9h:AP (2.857) BS01 rna ? GO:0003735 ... Q5SJH3 23812720
    19 4v9h:AQ (2.857) BS01 rna N/A GO:0003735 ... N/A 23812720
    20 4v9h:AR (2.857) BS01 rna ? GO:0003735 ... Q5SLQ0 23812720
    21 4v9h:AS (2.857) BS01 rna ? GO:0003723 ... Q5SHP2 23812720
    22 4v9h:AT (2.857) BS01 rna ? GO:0003723 ... P80380 23812720
    23 4v9h:AY (2.857) BS01 rna ? GO:0003746 ... Q5SHN5 23812720
    24 4v9h:AY (2.857) BS02 rna ? GO:0003746 ... Q5SHN5 23812720
    25 4v9h:AY (2.857) BS03 MG ? GO:0003746 ... Q5SHN5 23812720
    26 4v9h:B0 (2.857) BS01 rna ? GO:0003735 ... P60493 23812720
    27 4v9h:B0 (2.857) BS02 rna ? GO:0003735 ... P60493 23812720
    28 4v9h:B1 (2.857) BS01 rna ? GO:0003735 ... P60494 23812720
    29 4v9h:B2 (2.857) BS01 rna ? GO:0003735 ... Q5SHP6 23812720
    30 4v9h:B3 (2.857) BS01 rna ? GO:0003735 ... Q5SHQ6 23812720
    31 4v9h:B3 (2.857) BS02 rna ? GO:0003735 ... Q5SHQ6 23812720
    32 4v9h:B5 (2.857) BS01 rna ? GO:0003735 ... P80339 23812720
    33 4v9h:B6 (2.857) BS01 rna ? GO:0000049 ... P35871 23812720
    34 4v9h:B7 (2.857) BS01 rna ? GO:0003735 ... P80340 23812720
    35 4v9h:B8 (2.857) BS01 rna ? GO:0003735 ... Q5SKU1 23812720
    36 4v9h:B8 (2.857) BS02 MG ? GO:0003735 ... Q5SKU1 23812720
    37 4v9h:B9 (2.857) BS01 rna ? GO:0003735 ... Q5SHR2 23812720
    38 4v9h:BC (2.857) BS01 rna ? GO:0000049 ... Q5SLP7 23812720
    39 4v9h:BC (2.857) BS02 rna ? GO:0000049 ... Q5SLP7 23812720
    40 4v9h:BD (2.857) BS01 rna ? GO:0002181 ... P60405 23812720
    41 4v9h:BD (2.857) BS02 rna ? GO:0002181 ... P60405 23812720
    42 4v9h:BE (2.857) BS01 rna ? GO:0003735 ... Q5SHN8 23812720
    43 4v9h:BF (2.857) BS01 rna ? GO:0003735 ... Q5SHN9 23812720
    44 4v9h:BF (2.857) BS02 MG ? GO:0003735 ... Q5SHN9 23812720
    45 4v9h:BG (2.857) BS01 rna ? GO:0000049 ... Q5SHQ0 23812720
    46 4v9h:BG (2.857) BS02 rna ? GO:0000049 ... Q5SHQ0 23812720
    47 4v9h:BH (2.857) BS01 rna N/A GO:0003735 ... N/A 23812720
    48 4v9h:BJ (2.857) BS01 rna N/A GO:0050825 ... N/A 23812720
    49 4v9h:BK (2.857) BS01 rna ? GO:0003735 ... Q5SLP6 23812720
    50 4v9h:BL (2.857) BS01 MG N/A N/A N/A 23812720
    51 4v9h:BN (2.857) BS01 rna ? GO:0003729 ... P60488 23812720
    52 4v9h:BO (2.857) BS01 rna ? GO:0003735 ... Q5SHP8 23812720
    53 4v9h:BO (2.857) BS02 rna ? GO:0003735 ... Q5SHP8 23812720
    54 4v9h:BP (2.857) BS01 rna ? GO:0003735 ... Q5SHQ7 23812720
    55 4v9h:BQ (2.857) BS01 rna ? GO:0000049 ... P60489 23812720
    56 4v9h:BQ (2.857) BS02 rna ? GO:0000049 ... P60489 23812720
    57 4v9h:BR (2.857) BS01 rna ? GO:0003735 ... Q9Z9H5 23812720
    58 4v9h:BS (2.857) BS01 rna ? GO:0003735 ... Q5SHQ4 23812720
    59 4v9h:BS (2.857) BS02 rna ? GO:0003735 ... Q5SHQ4 23812720
    60 4v9h:BT (2.857) BS01 rna ? GO:0003735 ... P60490 23812720
    61 4v9h:BT (2.857) BS02 rna ? GO:0003735 ... P60490 23812720
    62 4v9h:BU (2.857) BS01 rna ? GO:0000027 ... P60491 23812720
    63 4v9h:BV (2.857) BS01 rna ? GO:0003723 ... P60492 23812720
    64 4v9h:BW (2.857) BS01 rna ? GO:0003735 ... Q5SHP3 23812720
    65 4v9h:BX (2.857) BS01 rna ? GO:0000027 ... Q5SHP0 23812720
    66 4v9h:BY (2.857) BS01 rna ? GO:0003723 ... Q5SHP9 23812720
    67 4v9h:BZ (2.857) BS01 rna ? GO:0003723 ... Q5SHZ1 23812720
    68 4v9h:BZ (2.857) BS02 rna ? GO:0003723 ... Q5SHZ1 23812720
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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