Home Research COVID-19 Services Publications People Teaching Job Opening News Forum --> -->
Online Services

●I-TASSER ●I-TASSER-MTD ●C-I-TASSER ●CR-I-TASSER ●QUARK ●C-QUARK ●LOMETS ●MUSTER ●CEthreader ●SEGMER ●DeepFold ●DeepFoldRNA ●FoldDesign ●COFACTOR ●COACH ●MetaGO ●TripletGO ●IonCom ●FG-MD ●ModRefiner ●REMO ●DEMO ●DEMO-EM ●DMFold ●SPRING ●COTH ●Threpp ●PEPPI ●BSpred ●ANGLOR ●EDock ●BSP-SLIM ●SAXSTER ●FUpred ●ThreaDom ●ThreaDomEx ●EvoDesign ●BindProf ●BindProfX ●SSIPe ●GPCR-I-TASSER ●MAGELLAN ●ResQ ●STRUM ●DAMpred

●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 62 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

    • Sort results by
    << < 1 > >>
    Go to page

    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 4v89:AB (3.7) BS01 rna ? GO:0000028 ... P0A7V0 22187675
    2 4v89:AC (3.7) BS01 rna ? GO:0000028 ... P0A7V3 22187675
    3 4v89:AD (3.7) BS01 rna ? GO:0000028 ... P0A7V8 22187675
    4 4v89:AE (3.7) BS01 rna ? GO:0000028 ... P0A7W1 22187675
    5 4v89:AF (3.7) BS01 rna ? GO:0002181 ... P02358 22187675
    6 4v89:AG (3.7) BS01 rna ? GO:0000028 ... P02359 22187675
    7 4v89:AH (3.7) BS01 rna ? GO:0000028 ... P0A7W7 22187675
    8 4v89:AI (3.7) BS01 rna ? GO:0000049 ... P0A7X3 22187675
    9 4v89:AJ (3.7) BS01 rna ? GO:0000049 ... P0A7R5 22187675
    10 4v89:AK (3.7) BS01 rna ? GO:0002181 ... P0A7R9 22187675
    11 4v89:AL (3.7) BS01 rna ? GO:0000049 ... P0A7S3 22187675
    12 4v89:AM (3.7) BS01 rna ? GO:0000049 ... P0A7S9 22187675
    13 4v89:AN (3.7) BS01 rna ? GO:0000028 ... P0AG59 22187675
    14 4v89:AO (3.7) BS01 rna ? GO:0000028 ... P0ADZ4 22187675
    15 4v89:AO (3.7) BS02 rna ? GO:0000028 ... P0ADZ4 22187675
    16 4v89:AP (3.7) BS01 rna ? GO:0000028 ... P0A7T3 22187675
    17 4v89:AQ (3.7) BS01 rna ? GO:0000028 ... P0AG63 22187675
    18 4v89:AR (3.7) BS01 rna ? GO:0002181 ... P0A7T7 22187675
    19 4v89:AS (3.7) BS01 rna ? GO:0000028 ... P0A7U3 22187675
    20 4v89:AT (3.7) BS01 rna ? GO:0000028 ... P0A7U7 22187675
    21 4v89:AU (3.7) BS01 rna ? GO:0000028 ... P68679 22187675
    22 4v89:AW (3.7) BS01 rna ? GO:0003924 ... P0A7I4 22187675
    23 4v89:AW (3.7) BS02 rna ? GO:0003924 ... P0A7I4 22187675
    24 4v89:AW (3.7) BS03 GNP ? GO:0003924 ... P0A7I4 22187675
    25 4v89:AW (3.7) BS04 MG ? GO:0003924 ... P0A7I4 22187675
    26 4v89:B0 (3.7) BS01 rna ? GO:0000027 ... P0A7L8 22187675
    27 4v89:B1 (3.7) BS01 rna ? GO:0000027 ... P0A7M2 22187675
    28 4v89:B2 (3.7) BS01 rna ? GO:0000027 ... P0A7M6 22187675
    29 4v89:B3 (3.7) BS01 rna ? GO:0000027 ... P0AG51 22187675
    30 4v89:B3 (3.7) BS02 rna ? GO:0000027 ... P0AG51 22187675
    31 4v89:B4 (3.7) BS01 rna ? GO:0000027 ... P0A7N4 22187675
    32 4v89:B5 (3.7) BS01 rna ? GO:0000027 ... P0A7N9 22187675
    33 4v89:B6 (3.7) BS01 rna ? GO:0002181 ... P0A7P5 22187675
    34 4v89:B7 (3.7) BS01 rna ? GO:0002181 ... P0A7Q1 22187675
    35 4v89:B8 (3.7) BS01 rna ? GO:0002181 ... P0A7Q6 22187675
    36 4v89:BC (3.7) BS01 rna ? GO:0000027 ... P60422 22187675
    37 4v89:BC (3.7) BS02 rna ? GO:0000027 ... P60422 22187675
    38 4v89:BD (3.7) BS01 rna ? GO:0000027 ... P60438 22187675
    39 4v89:BE (3.7) BS01 rna ? GO:0001070 ... P60723 22187675
    40 4v89:BF (3.7) BS01 rna ? GO:0000027 ... P62399 22187675
    41 4v89:BF (3.7) BS02 rna ? GO:0000027 ... P62399 22187675
    42 4v89:BG (3.7) BS01 rna ? GO:0000027 ... P0AG55 22187675
    43 4v89:BH (3.7) BS01 rna ? GO:0002181 ... P0A7J3 22187675
    44 4v89:BI (3.7) BS01 rna ? GO:0000027 ... P0A7J7 22187675
    45 4v89:BN (3.7) BS01 rna ? GO:0002181 ... P0AA10 22187675
    46 4v89:BO (3.7) BS01 rna ? GO:0002181 ... P0ADY3 22187675
    47 4v89:BO (3.7) BS02 rna ? GO:0002181 ... P0ADY3 22187675
    48 4v89:BP (3.7) BS01 rna ? GO:0002181 ... P02413 22187675
    49 4v89:BQ (3.7) BS01 rna ? GO:0000027 ... P0ADY7 22187675
    50 4v89:BQ (3.7) BS02 rna ? GO:0000027 ... P0ADY7 22187675
    51 4v89:BR (3.7) BS01 rna ? GO:0000027 ... P0AG44 22187675
    52 4v89:BS (3.7) BS01 rna ? GO:0002181 ... P0C018 22187675
    53 4v89:BS (3.7) BS02 rna ? GO:0002181 ... P0C018 22187675
    54 4v89:BT (3.7) BS01 rna ? GO:0000027 ... P0A7K6 22187675
    55 4v89:BT (3.7) BS02 rna ? GO:0000027 ... P0A7K6 22187675
    56 4v89:BU (3.7) BS01 rna ? GO:0000027 ... P0A7L3 22187675
    57 4v89:BV (3.7) BS01 rna ? GO:0002181 ... P0AG48 22187675
    58 4v89:BW (3.7) BS01 rna ? GO:0002181 ... P61175 22187675
    59 4v89:BX (3.7) BS01 rna ? GO:0000027 ... P0ADZ0 22187675
    60 4v89:BY (3.7) BS01 rna ? GO:0000027 ... P60624 22187675
    61 4v89:BZ (3.7) BS01 rna ? GO:0000027 ... P68919 22187675
    62 4v89:BZ (3.7) BS02 rna ? GO:0000027 ... P68919 22187675
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

    • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218