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BioLiP
Download all results in tab-seperated text for 153 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 4v7r:AB (4.0) BS01 rna ? GO:0000054 ... P25443 21109664
    2 4v7r:AC (4.0) BS01 rna ? GO:0000054 ... P05750 21109664
    3 4v7r:AD (4.0) BS01 rna ? GO:0000028 ... P26783 21109664
    4 4v7r:AE (4.0) BS01 rna ? GO:0000462 ... O13516 21109664
    5 4v7r:AF (4.0) BS01 rna N/A GO:0003735 ... N/A 21109664
    6 4v7r:AG (4.0) BS01 rna ? GO:0000462 ... P05756 21109664
    7 4v7r:AH (4.0) BS01 rna ? GO:0000028 ... P06367 21109664
    8 4v7r:AI (4.0) BS01 rna ? GO:0000028 ... Q01855 21109664
    9 4v7r:AJ (4.0) BS01 rna N/A GO:0003735 ... N/A 21109664
    10 4v7r:AL (4.0) BS01 rna N/A GO:0003676 ... N/A 21109664
    11 4v7r:AM (4.0) BS01 rna ? GO:0000028 ... P07280 21109664
    12 4v7r:AN (4.0) BS01 rna ? GO:0000462 ... P38701 21109664
    13 4v7r:AN (4.0) BS02 OHX ? GO:0000462 ... P38701 21109664
    14 4v7r:AO (4.0) BS01 rna ? GO:0002181 ... P0C0W1 21109664
    15 4v7r:AP (4.0) BS01 rna N/A GO:0003735 ... N/A 21109664
    16 4v7r:AR (4.0) BS01 rna ? GO:0000028 ... Q3E7X9 21109664
    17 4v7r:AS (4.0) BS01 rna ? GO:0002181 ... P41057 21109664
    18 4v7r:AS (4.0) BS02 OHX ? GO:0002181 ... P41057 21109664
    19 4v7r:AT (4.0) BS01 rna ? GO:0001965 ... P38011 21109664
    20 4v7r:AT (4.0) BS02 OHX ? GO:0001965 ... P38011 21109664
    21 4v7r:Ab (4.0) BS01 rna N/A N/A N/A 21109664
    22 4v7r:Ac (4.0) BS01 rna N/A N/A N/A 21109664
    23 4v7r:Ad (4.0) BS01 rna N/A N/A N/A 21109664
    24 4v7r:Ah (4.0) BS01 rna N/A N/A N/A 21109664
    25 4v7r:BA (4.0) BS01 rna N/A GO:0003723 ... N/A 21109664
    26 4v7r:BB (4.0) BS01 rna N/A GO:0003735 ... N/A 21109664
    27 4v7r:BC (4.0) BS01 rna ? GO:0000027 ... P14126 21109664
    28 4v7r:BC (4.0) BS02 OHX ? GO:0000027 ... P14126 21109664
    29 4v7r:BC (4.0) BS03 OHX ? GO:0000027 ... P14126 21109664
    30 4v7r:BD (4.0) BS01 rna ? GO:0002181 ... P10664 21109664
    31 4v7r:BD (4.0) BS02 rna ? GO:0002181 ... P10664 21109664
    32 4v7r:BE (4.0) BS01 rna ? GO:0000027 ... P26321 21109664
    33 4v7r:BE (4.0) BS02 rna ? GO:0000027 ... P26321 21109664
    34 4v7r:BF (4.0) BS01 rna ? GO:0000027 ... Q02326 21109664
    35 4v7r:BG (4.0) BS01 rna ? GO:0000463 ... P05737 21109664
    36 4v7r:BH (4.0) BS01 rna ? GO:0000470 ... P17076 21109664
    37 4v7r:BI (4.0) BS01 rna ? GO:0002181 ... P05738 21109664
    38 4v7r:BJ (4.0) BS01 rna ? GO:0000027 ... P41805 21109664
    39 4v7r:BJ (4.0) BS02 rna ? GO:0000027 ... P41805 21109664
    40 4v7r:BK (4.0) BS01 rna ? GO:0000027 ... P0C0W9 21109664
    41 4v7r:BK (4.0) BS02 rna ? GO:0000027 ... P0C0W9 21109664
    42 4v7r:BN (4.0) BS01 rna ? GO:0000027 ... P36105 21109664
    43 4v7r:BO (4.0) BS01 rna ? GO:0002181 ... P05748 21109664
    44 4v7r:BO (4.0) BS02 rna ? GO:0002181 ... P05748 21109664
    45 4v7r:BP (4.0) BS01 rna ? GO:0000470 ... P26784 21109664
    46 4v7r:BQ (4.0) BS01 rna ? GO:0000448 ... P05740 21109664
    47 4v7r:BQ (4.0) BS02 rna ? GO:0000448 ... P05740 21109664
    48 4v7r:BR (4.0) BS01 rna N/A GO:0003735 ... N/A 21109664
    49 4v7r:BS (4.0) BS01 rna N/A GO:0003723 ... N/A 21109664
    50 4v7r:BT (4.0) BS01 rna ? GO:0002181 ... Q02753 21109664
    51 4v7r:BT (4.0) BS02 rna ? GO:0002181 ... Q02753 21109664
    52 4v7r:BT (4.0) BS03 OHX ? GO:0002181 ... Q02753 21109664
    53 4v7r:BU (4.0) BS01 rna N/A GO:0003735 ... N/A 21109664
    54 4v7r:BV (4.0) BS01 rna ? GO:0002181 ... P04449 21109664
    55 4v7r:BW (4.0) BS01 rna ? GO:0000027 ... P04456 21109664
    56 4v7r:BW (4.0) BS02 rna ? GO:0000027 ... P04456 21109664
    57 4v7r:BX (4.0) BS01 rna ? GO:0002181 ... P05743 21109664
    58 4v7r:BX (4.0) BS02 rna ? GO:0002181 ... P05743 21109664
    59 4v7r:BY (4.0) BS01 rna ? GO:0002181 ... P02406 21109664
    60 4v7r:BY (4.0) BS02 OHX ? GO:0002181 ... P02406 21109664
    61 4v7r:BZ (4.0) BS01 rna ? GO:0002181 ... P14120 21109664
    62 4v7r:Ba (4.0) BS01 rna ? GO:0002181 ... P0C2H8 21109664
    63 4v7r:Bb (4.0) BS01 rna ? GO:0002181 ... P38061 21109664
    64 4v7r:Bc (4.0) BS01 rna N/A GO:0000463 ... N/A 21109664
    65 4v7r:Bc (4.0) BS02 rna N/A GO:0000463 ... N/A 21109664
    66 4v7r:Bd (4.0) BS01 rna ? GO:0000448 ... P49166 21109664
    67 4v7r:Bd (4.0) BS02 rna ? GO:0000448 ... P49166 21109664
    68 4v7r:Bd (4.0) BS03 OHX ? GO:0000448 ... P49166 21109664
    69 4v7r:Bd (4.0) BS04 OHX ? GO:0000448 ... P49166 21109664
    70 4v7r:Be (4.0) BS01 rna ? GO:0002181 ... P04650 21109664
    71 4v7r:Be (4.0) BS02 rna ? GO:0002181 ... P04650 21109664
    72 4v7r:Bf (4.0) BS01 rna N/A GO:0003735 ... N/A 21109664
    73 4v7r:Bg (4.0) BS01 rna N/A GO:0003735 ... N/A 21109664
    74 4v7r:Bg (4.0) BS02 OHX N/A GO:0003735 ... N/A 21109664
    75 4v7r:Bh (4.0) BS01 rna N/A N/A N/A 21109664
    76 4v7r:CA (4.0) BS01 rna ? GO:0000028 ... P32905 21109664
    77 4v7r:CB (4.0) BS01 rna ? GO:0000054 ... P25443 21109664
    78 4v7r:CC (4.0) BS01 rna ? GO:0000054 ... P05750 21109664
    79 4v7r:CD (4.0) BS01 rna ? GO:0000028 ... P26783 21109664
    80 4v7r:CE (4.0) BS01 rna ? GO:0000462 ... O13516 21109664
    81 4v7r:CF (4.0) BS01 rna N/A GO:0003735 ... N/A 21109664
    82 4v7r:CG (4.0) BS01 rna ? GO:0000462 ... P05756 21109664
    83 4v7r:CH (4.0) BS01 rna ? GO:0000028 ... P06367 21109664
    84 4v7r:CI (4.0) BS01 rna ? GO:0000028 ... Q01855 21109664
    85 4v7r:CJ (4.0) BS01 rna N/A GO:0003735 ... N/A 21109664
    86 4v7r:CL (4.0) BS01 rna N/A GO:0003676 ... N/A 21109664
    87 4v7r:CM (4.0) BS01 rna ? GO:0000028 ... P07280 21109664
    88 4v7r:CN (4.0) BS01 rna ? GO:0000462 ... P38701 21109664
    89 4v7r:CO (4.0) BS01 rna ? GO:0002181 ... P0C0W1 21109664
    90 4v7r:CP (4.0) BS01 rna N/A GO:0003735 ... N/A 21109664
    91 4v7r:CR (4.0) BS01 rna ? GO:0000028 ... Q3E7X9 21109664
    92 4v7r:CS (4.0) BS01 rna ? GO:0002181 ... P41057 21109664
    93 4v7r:CS (4.0) BS02 OHX ? GO:0002181 ... P41057 21109664
    94 4v7r:CT (4.0) BS01 rna ? GO:0001965 ... P38011 21109664
    95 4v7r:CT (4.0) BS02 OHX ? GO:0001965 ... P38011 21109664
    96 4v7r:Cb (4.0) BS01 rna N/A N/A N/A 21109664
    97 4v7r:Cc (4.0) BS01 rna N/A N/A N/A 21109664
    98 4v7r:Cd (4.0) BS01 rna N/A N/A N/A 21109664
    99 4v7r:Ch (4.0) BS01 rna N/A N/A N/A 21109664
    100 4v7r:DA (4.0) BS01 rna N/A GO:0003723 ... N/A 21109664
    101 4v7r:DB (4.0) BS01 rna N/A GO:0003735 ... N/A 21109664
    102 4v7r:DC (4.0) BS01 rna ? GO:0000027 ... P14126 21109664
    103 4v7r:DC (4.0) BS02 OHX ? GO:0000027 ... P14126 21109664
    104 4v7r:DD (4.0) BS01 rna ? GO:0002181 ... P10664 21109664
    105 4v7r:DD (4.0) BS02 rna ? GO:0002181 ... P10664 21109664
    106 4v7r:DE (4.0) BS01 rna ? GO:0000027 ... P26321 21109664
    107 4v7r:DE (4.0) BS02 rna ? GO:0000027 ... P26321 21109664
    108 4v7r:DE (4.0) BS03 OHX ? GO:0000027 ... P26321 21109664
    109 4v7r:DF (4.0) BS01 rna ? GO:0000027 ... Q02326 21109664
    110 4v7r:DF (4.0) BS02 rna ? GO:0000027 ... Q02326 21109664
    111 4v7r:DG (4.0) BS01 rna ? GO:0000463 ... P05737 21109664
    112 4v7r:DH (4.0) BS01 rna ? GO:0000470 ... P17076 21109664
    113 4v7r:DI (4.0) BS01 rna ? GO:0002181 ... P05738 21109664
    114 4v7r:DJ (4.0) BS01 rna ? GO:0000027 ... P41805 21109664
    115 4v7r:DJ (4.0) BS02 rna ? GO:0000027 ... P41805 21109664
    116 4v7r:DK (4.0) BS01 rna ? GO:0000027 ... P0C0W9 21109664
    117 4v7r:DK (4.0) BS02 rna ? GO:0000027 ... P0C0W9 21109664
    118 4v7r:DL (4.0) BS01 rna N/A GO:0003735 ... N/A 21109664
    119 4v7r:DM (4.0) BS01 rna ? GO:0000027 ... P05317 21109664
    120 4v7r:DN (4.0) BS01 rna ? GO:0000027 ... P36105 21109664
    121 4v7r:DO (4.0) BS01 rna ? GO:0002181 ... P05748 21109664
    122 4v7r:DO (4.0) BS02 rna ? GO:0002181 ... P05748 21109664
    123 4v7r:DP (4.0) BS01 rna ? GO:0000470 ... P26784 21109664
    124 4v7r:DQ (4.0) BS01 rna ? GO:0000448 ... P05740 21109664
    125 4v7r:DQ (4.0) BS02 rna ? GO:0000448 ... P05740 21109664
    126 4v7r:DR (4.0) BS01 rna N/A GO:0003735 ... N/A 21109664
    127 4v7r:DS (4.0) BS01 rna N/A GO:0003723 ... N/A 21109664
    128 4v7r:DS (4.0) BS02 rna N/A GO:0003723 ... N/A 21109664
    129 4v7r:DT (4.0) BS01 rna ? GO:0002181 ... Q02753 21109664
    130 4v7r:DT (4.0) BS02 OHX ? GO:0002181 ... Q02753 21109664
    131 4v7r:DU (4.0) BS01 rna N/A GO:0003735 ... N/A 21109664
    132 4v7r:DV (4.0) BS01 rna ? GO:0002181 ... P04449 21109664
    133 4v7r:DW (4.0) BS01 rna ? GO:0000027 ... P04456 21109664
    134 4v7r:DW (4.0) BS02 rna ? GO:0000027 ... P04456 21109664
    135 4v7r:DX (4.0) BS01 rna ? GO:0002181 ... P05743 21109664
    136 4v7r:DX (4.0) BS02 rna ? GO:0002181 ... P05743 21109664
    137 4v7r:DY (4.0) BS01 rna ? GO:0002181 ... P02406 21109664
    138 4v7r:DY (4.0) BS02 OHX ? GO:0002181 ... P02406 21109664
    139 4v7r:DZ (4.0) BS01 rna ? GO:0002181 ... P14120 21109664
    140 4v7r:Da (4.0) BS01 rna ? GO:0002181 ... P0C2H8 21109664
    141 4v7r:Db (4.0) BS01 rna ? GO:0002181 ... P38061 21109664
    142 4v7r:Dc (4.0) BS01 rna N/A GO:0000463 ... N/A 21109664
    143 4v7r:Dc (4.0) BS02 rna N/A GO:0000463 ... N/A 21109664
    144 4v7r:Dd (4.0) BS01 rna ? GO:0000448 ... P49166 21109664
    145 4v7r:Dd (4.0) BS02 rna ? GO:0000448 ... P49166 21109664
    146 4v7r:Dd (4.0) BS03 OHX ? GO:0000448 ... P49166 21109664
    147 4v7r:Dd (4.0) BS04 OHX ? GO:0000448 ... P49166 21109664
    148 4v7r:De (4.0) BS01 rna ? GO:0002181 ... P04650 21109664
    149 4v7r:De (4.0) BS02 rna ? GO:0002181 ... P04650 21109664
    150 4v7r:Df (4.0) BS01 rna N/A GO:0003735 ... N/A 21109664
    151 4v7r:Dg (4.0) BS01 rna N/A GO:0003735 ... N/A 21109664
    152 4v7r:Dg (4.0) BS02 OHX N/A GO:0003735 ... N/A 21109664
    153 4v7r:Dh (4.0) BS01 rna N/A N/A N/A 21109664
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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