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BioLiP
Download all results in tab-seperated text for 140 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 4v7m:AB (3.45) BS01 rna ? GO:0003735 ... P80371 20154709
    2 4v7m:AC (3.45) BS01 rna ? GO:0003676 ... P80372 20154709
    3 4v7m:AD (3.45) BS01 rna ? GO:0003723 ... P80373 20154709
    4 4v7m:AD (3.45) BS02 ZN ? GO:0003723 ... P80373 20154709
    5 4v7m:AE (3.45) BS01 rna ? GO:0003723 ... Q5SHQ5 20154709
    6 4v7m:AF (3.45) BS01 rna ? GO:0003735 ... Q5SLP8 20154709
    7 4v7m:AG (3.45) BS01 rna ? GO:0000028 ... P17291 20154709
    8 4v7m:AG (3.45) BS02 rna ? GO:0000028 ... P17291 20154709
    9 4v7m:AH (3.45) BS01 rna N/A GO:0003735 ... N/A 20154709
    10 4v7m:AI (3.45) BS01 rna ? GO:0000049 ... P80374 20154709
    11 4v7m:AJ (3.45) BS01 rna ? GO:0000049 ... Q5SHN7 20154709
    12 4v7m:AK (3.45) BS01 rna ? GO:0003735 ... P80376 20154709
    13 4v7m:AL (3.45) BS01 rna ? GO:0000049 ... Q5SHN3 20154709
    14 4v7m:AM (3.45) BS01 rna ? GO:0000049 ... P80377 20154709
    15 4v7m:AM (3.45) BS02 rna ? GO:0000049 ... P80377 20154709
    16 4v7m:AM (3.45) BS03 rna ? GO:0000049 ... P80377 20154709
    17 4v7m:AN (3.45) BS01 rna N/A GO:0003735 ... N/A 20154709
    18 4v7m:AO (3.45) BS01 rna ? GO:0003735 ... Q5SJ76 20154709
    19 4v7m:AO (3.45) BS02 rna ? GO:0003735 ... Q5SJ76 20154709
    20 4v7m:AP (3.45) BS01 rna ? GO:0003735 ... Q5SJH3 20154709
    21 4v7m:AQ (3.45) BS01 rna N/A GO:0003735 ... N/A 20154709
    22 4v7m:AR (3.45) BS01 rna ? GO:0003735 ... Q5SLQ0 20154709
    23 4v7m:AS (3.45) BS01 rna ? GO:0000028 ... Q5SHP2 20154709
    24 4v7m:AT (3.45) BS01 rna ? GO:0003723 ... P80380 20154709
    25 4v7m:B0 (3.45) BS01 rna ? GO:0003735 ... P60493 20154709
    26 4v7m:B0 (3.45) BS02 rna ? GO:0003735 ... P60493 20154709
    27 4v7m:B0 (3.45) BS03 rna ? GO:0003735 ... P60493 20154709
    28 4v7m:B1 (3.45) BS01 rna ? GO:0003735 ... P60494 20154709
    29 4v7m:B2 (3.45) BS01 rna ? GO:0003735 ... Q5SHP6 20154709
    30 4v7m:B3 (3.45) BS01 rna ? GO:0003735 ... Q5SHQ6 20154709
    31 4v7m:B3 (3.45) BS02 rna ? GO:0003735 ... Q5SHQ6 20154709
    32 4v7m:B4 (3.45) BS01 ZN ? GO:0003735 ... Q5SJE1 20154709
    33 4v7m:B5 (3.45) BS01 rna ? GO:0003735 ... P80339 20154709
    34 4v7m:B5 (3.45) BS02 ZN ? GO:0003735 ... P80339 20154709
    35 4v7m:B6 (3.45) BS01 rna ? GO:0000049 ... P35871 20154709
    36 4v7m:B7 (3.45) BS01 rna ? GO:0003735 ... P80340 20154709
    37 4v7m:B8 (3.45) BS01 rna ? GO:0003735 ... Q5SKU1 20154709
    38 4v7m:B9 (3.45) BS01 rna ? GO:0003735 ... Q5SHR2 20154709
    39 4v7m:B9 (3.45) BS02 ZN ? GO:0003735 ... Q5SHR2 20154709
    40 4v7m:BC (3.45) BS01 rna ? GO:0000049 ... Q5SLP7 20154709
    41 4v7m:BD (3.45) BS01 rna ? GO:0002181 ... P60405 20154709
    42 4v7m:BD (3.45) BS02 MG ? GO:0002181 ... P60405 20154709
    43 4v7m:BD (3.45) BS03 MG ? GO:0002181 ... P60405 20154709
    44 4v7m:BE (3.45) BS01 rna ? GO:0003735 ... Q5SHN8 20154709
    45 4v7m:BF (3.45) BS01 rna ? GO:0003735 ... Q5SHN9 20154709
    46 4v7m:BF (3.45) BS02 MG ? GO:0003735 ... Q5SHN9 20154709
    47 4v7m:BG (3.45) BS01 rna ? GO:0000049 ... Q5SHQ0 20154709
    48 4v7m:BG (3.45) BS02 rna ? GO:0000049 ... Q5SHQ0 20154709
    49 4v7m:BG (3.45) BS03 rna ? GO:0000049 ... Q5SHQ0 20154709
    50 4v7m:BH (3.45) BS01 rna N/A GO:0003735 ... N/A 20154709
    51 4v7m:BI (3.45) BS01 rna ? GO:0003735 ... Q5SLQ1 20154709
    52 4v7m:BI (3.45) BS02 rna ? GO:0003735 ... Q5SLQ1 20154709
    53 4v7m:BN (3.45) BS01 rna ? GO:0003729 ... P60488 20154709
    54 4v7m:BO (3.45) BS01 rna ? GO:0003735 ... Q5SHP8 20154709
    55 4v7m:BO (3.45) BS02 rna ? GO:0003735 ... Q5SHP8 20154709
    56 4v7m:BP (3.45) BS01 rna ? GO:0003735 ... Q5SHQ7 20154709
    57 4v7m:BQ (3.45) BS01 rna ? GO:0000049 ... P60489 20154709
    58 4v7m:BQ (3.45) BS02 rna ? GO:0000049 ... P60489 20154709
    59 4v7m:BR (3.45) BS01 rna ? GO:0003735 ... Q9Z9H5 20154709
    60 4v7m:BS (3.45) BS01 rna ? GO:0003735 ... Q5SHQ4 20154709
    61 4v7m:BS (3.45) BS02 rna ? GO:0003735 ... Q5SHQ4 20154709
    62 4v7m:BT (3.45) BS01 rna ? GO:0003735 ... P60490 20154709
    63 4v7m:BT (3.45) BS02 rna ? GO:0003735 ... P60490 20154709
    64 4v7m:BU (3.45) BS01 rna ? GO:0000027 ... P60491 20154709
    65 4v7m:BU (3.45) BS02 MG ? GO:0000027 ... P60491 20154709
    66 4v7m:BV (3.45) BS01 rna ? GO:0003723 ... P60492 20154709
    67 4v7m:BW (3.45) BS01 rna ? GO:0003735 ... Q5SHP3 20154709
    68 4v7m:BX (3.45) BS01 rna ? GO:0000027 ... Q5SHP0 20154709
    69 4v7m:BY (3.45) BS01 rna ? GO:0003723 ... Q5SHP9 20154709
    70 4v7m:BZ (3.45) BS01 rna ? GO:0003723 ... Q5SHZ1 20154709
    71 4v7m:BZ (3.45) BS02 rna ? GO:0003723 ... Q5SHZ1 20154709
    72 4v7m:CB (3.45) BS01 rna ? GO:0003735 ... P80371 20154709
    73 4v7m:CC (3.45) BS01 rna ? GO:0003676 ... P80372 20154709
    74 4v7m:CD (3.45) BS01 rna ? GO:0003723 ... P80373 20154709
    75 4v7m:CE (3.45) BS01 rna ? GO:0003723 ... Q5SHQ5 20154709
    76 4v7m:CF (3.45) BS01 rna ? GO:0003735 ... Q5SLP8 20154709
    77 4v7m:CG (3.45) BS01 rna ? GO:0000028 ... P17291 20154709
    78 4v7m:CG (3.45) BS02 rna ? GO:0000028 ... P17291 20154709
    79 4v7m:CH (3.45) BS01 rna N/A GO:0003735 ... N/A 20154709
    80 4v7m:CI (3.45) BS01 rna ? GO:0000049 ... P80374 20154709
    81 4v7m:CJ (3.45) BS01 rna ? GO:0000049 ... Q5SHN7 20154709
    82 4v7m:CK (3.45) BS01 rna ? GO:0003735 ... P80376 20154709
    83 4v7m:CK (3.45) BS02 MG ? GO:0003735 ... P80376 20154709
    84 4v7m:CL (3.45) BS01 rna ? GO:0000049 ... Q5SHN3 20154709
    85 4v7m:CM (3.45) BS01 rna ? GO:0000049 ... P80377 20154709
    86 4v7m:CN (3.45) BS01 rna N/A GO:0003735 ... N/A 20154709
    87 4v7m:CO (3.45) BS01 rna ? GO:0003735 ... Q5SJ76 20154709
    88 4v7m:CO (3.45) BS02 rna ? GO:0003735 ... Q5SJ76 20154709
    89 4v7m:CP (3.45) BS01 rna ? GO:0003735 ... Q5SJH3 20154709
    90 4v7m:CQ (3.45) BS01 rna N/A GO:0003735 ... N/A 20154709
    91 4v7m:CR (3.45) BS01 rna ? GO:0003735 ... Q5SLQ0 20154709
    92 4v7m:CS (3.45) BS01 rna ? GO:0000028 ... Q5SHP2 20154709
    93 4v7m:CT (3.45) BS01 rna ? GO:0003723 ... P80380 20154709
    94 4v7m:D0 (3.45) BS01 rna ? GO:0003735 ... P60493 20154709
    95 4v7m:D0 (3.45) BS02 rna ? GO:0003735 ... P60493 20154709
    96 4v7m:D0 (3.45) BS03 rna ? GO:0003735 ... P60493 20154709
    97 4v7m:D1 (3.45) BS01 rna ? GO:0003735 ... P60494 20154709
    98 4v7m:D2 (3.45) BS01 rna ? GO:0003735 ... Q5SHP6 20154709
    99 4v7m:D3 (3.45) BS01 rna ? GO:0003735 ... Q5SHQ6 20154709
    100 4v7m:D3 (3.45) BS02 rna ? GO:0003735 ... Q5SHQ6 20154709
    101 4v7m:D4 (3.45) BS01 ZN ? GO:0003735 ... Q5SJE1 20154709
    102 4v7m:D5 (3.45) BS01 rna ? GO:0003735 ... P80339 20154709
    103 4v7m:D5 (3.45) BS02 ZN ? GO:0003735 ... P80339 20154709
    104 4v7m:D6 (3.45) BS01 rna ? GO:0000049 ... P35871 20154709
    105 4v7m:D7 (3.45) BS01 rna ? GO:0003735 ... P80340 20154709
    106 4v7m:D8 (3.45) BS01 rna ? GO:0003735 ... Q5SKU1 20154709
    107 4v7m:D9 (3.45) BS01 rna ? GO:0003735 ... Q5SHR2 20154709
    108 4v7m:D9 (3.45) BS02 ZN ? GO:0003735 ... Q5SHR2 20154709
    109 4v7m:DC (3.45) BS01 rna ? GO:0000049 ... Q5SLP7 20154709
    110 4v7m:DD (3.45) BS01 rna ? GO:0002181 ... P60405 20154709
    111 4v7m:DD (3.45) BS02 MG ? GO:0002181 ... P60405 20154709
    112 4v7m:DD (3.45) BS03 MG ? GO:0002181 ... P60405 20154709
    113 4v7m:DE (3.45) BS01 rna ? GO:0003735 ... Q5SHN8 20154709
    114 4v7m:DF (3.45) BS01 rna ? GO:0003735 ... Q5SHN9 20154709
    115 4v7m:DF (3.45) BS02 MG ? GO:0003735 ... Q5SHN9 20154709
    116 4v7m:DG (3.45) BS01 rna ? GO:0000049 ... Q5SHQ0 20154709
    117 4v7m:DG (3.45) BS02 rna ? GO:0000049 ... Q5SHQ0 20154709
    118 4v7m:DG (3.45) BS03 rna ? GO:0000049 ... Q5SHQ0 20154709
    119 4v7m:DH (3.45) BS01 rna N/A GO:0003735 ... N/A 20154709
    120 4v7m:DI (3.45) BS01 rna ? GO:0003735 ... Q5SLQ1 20154709
    121 4v7m:DN (3.45) BS01 rna ? GO:0003729 ... P60488 20154709
    122 4v7m:DO (3.45) BS01 rna ? GO:0003735 ... Q5SHP8 20154709
    123 4v7m:DO (3.45) BS02 rna ? GO:0003735 ... Q5SHP8 20154709
    124 4v7m:DO (3.45) BS03 MG ? GO:0003735 ... Q5SHP8 20154709
    125 4v7m:DP (3.45) BS01 rna ? GO:0003735 ... Q5SHQ7 20154709
    126 4v7m:DQ (3.45) BS01 rna ? GO:0000049 ... P60489 20154709
    127 4v7m:DQ (3.45) BS02 rna ? GO:0000049 ... P60489 20154709
    128 4v7m:DQ (3.45) BS03 rna ? GO:0000049 ... P60489 20154709
    129 4v7m:DR (3.45) BS01 rna ? GO:0003735 ... Q9Z9H5 20154709
    130 4v7m:DS (3.45) BS01 rna ? GO:0003735 ... Q5SHQ4 20154709
    131 4v7m:DS (3.45) BS02 rna ? GO:0003735 ... Q5SHQ4 20154709
    132 4v7m:DT (3.45) BS01 rna ? GO:0003735 ... P60490 20154709
    133 4v7m:DT (3.45) BS02 rna ? GO:0003735 ... P60490 20154709
    134 4v7m:DU (3.45) BS01 rna ? GO:0000027 ... P60491 20154709
    135 4v7m:DV (3.45) BS01 rna ? GO:0003723 ... P60492 20154709
    136 4v7m:DW (3.45) BS01 rna ? GO:0003735 ... Q5SHP3 20154709
    137 4v7m:DX (3.45) BS01 rna ? GO:0000027 ... Q5SHP0 20154709
    138 4v7m:DY (3.45) BS01 rna ? GO:0003723 ... Q5SHP9 20154709
    139 4v7m:DZ (3.45) BS01 rna ? GO:0003723 ... Q5SHZ1 20154709
    140 4v7m:DZ (3.45) BS02 rna ? GO:0003723 ... Q5SHZ1 20154709
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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