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BioLiP
Download all results in tab-seperated text for 139 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 4v7k:A0 (3.6) BS01 rna ? GO:0003735 ... P60493 20005802
    2 4v7k:A0 (3.6) BS02 rna ? GO:0003735 ... P60493 20005802
    3 4v7k:A1 (3.6) BS01 rna ? GO:0003735 ... P60494 20005802
    4 4v7k:A2 (3.6) BS01 rna ? GO:0003735 ... Q5SHP6 20005802
    5 4v7k:A3 (3.6) BS01 rna ? GO:0003735 ... Q5SHQ6 20005802
    6 4v7k:A4 (3.6) BS01 rna ? GO:0003735 ... Q5SJE1 20005802
    7 4v7k:A5 (3.6) BS01 rna ? GO:0003735 ... P80339 20005802
    8 4v7k:A6 (3.6) BS01 rna ? GO:0000049 ... P35871 20005802
    9 4v7k:A7 (3.6) BS01 rna ? GO:0003735 ... P80340 20005802
    10 4v7k:A8 (3.6) BS01 rna ? GO:0003735 ... Q5SKU1 20005802
    11 4v7k:A9 (3.6) BS01 rna ? GO:0003735 ... Q5SHR2 20005802
    12 4v7k:AC (3.6) BS01 rna ? GO:0000049 ... Q5SLP7 20005802
    13 4v7k:AD (3.6) BS01 rna ? GO:0002181 ... P60405 20005802
    14 4v7k:AD (3.6) BS02 rna ? GO:0002181 ... P60405 20005802
    15 4v7k:AE (3.6) BS01 rna ? GO:0003735 ... Q5SHN8 20005802
    16 4v7k:AF (3.6) BS01 rna ? GO:0003735 ... Q5SHN9 20005802
    17 4v7k:AF (3.6) BS02 MG ? GO:0003735 ... Q5SHN9 20005802
    18 4v7k:AG (3.6) BS01 rna ? GO:0000049 ... Q5SHQ0 20005802
    19 4v7k:AG (3.6) BS02 rna ? GO:0000049 ... Q5SHQ0 20005802
    20 4v7k:AG (3.6) BS03 rna ? GO:0000049 ... Q5SHQ0 20005802
    21 4v7k:AH (3.6) BS01 rna N/A GO:0003735 ... N/A 20005802
    22 4v7k:AI (3.6) BS01 rna ? GO:0003735 ... Q5SLQ1 20005802
    23 4v7k:AJ (3.6) BS01 rna ? GO:0003735 ... Q8VVE3 20005802
    24 4v7k:AN (3.6) BS01 rna ? GO:0003729 ... P60488 20005802
    25 4v7k:AO (3.6) BS01 rna ? GO:0003735 ... Q5SHP8 20005802
    26 4v7k:AO (3.6) BS02 rna ? GO:0003735 ... Q5SHP8 20005802
    27 4v7k:AP (3.6) BS01 rna ? GO:0003735 ... Q5SHQ7 20005802
    28 4v7k:AQ (3.6) BS01 rna ? GO:0000049 ... P60489 20005802
    29 4v7k:AQ (3.6) BS02 rna ? GO:0000049 ... P60489 20005802
    30 4v7k:AR (3.6) BS01 rna ? GO:0003735 ... Q9Z9H5 20005802
    31 4v7k:AS (3.6) BS01 rna ? GO:0003735 ... Q5SHQ4 20005802
    32 4v7k:AS (3.6) BS02 rna ? GO:0003735 ... Q5SHQ4 20005802
    33 4v7k:AT (3.6) BS01 rna ? GO:0003735 ... P60490 20005802
    34 4v7k:AT (3.6) BS02 rna ? GO:0003735 ... P60490 20005802
    35 4v7k:AU (3.6) BS01 rna ? GO:0000027 ... P60491 20005802
    36 4v7k:AV (3.6) BS01 rna ? GO:0003723 ... P60492 20005802
    37 4v7k:AW (3.6) BS01 rna ? GO:0003735 ... Q5SHP3 20005802
    38 4v7k:AX (3.6) BS01 rna ? GO:0000027 ... Q5SHP0 20005802
    39 4v7k:AY (3.6) BS01 rna ? GO:0003723 ... Q5SHP9 20005802
    40 4v7k:AZ (3.6) BS01 rna ? GO:0003723 ... Q5SHZ1 20005802
    41 4v7k:AZ (3.6) BS02 rna ? GO:0003723 ... Q5SHZ1 20005802
    42 4v7k:Ab (3.6) BS01 rna ? GO:0003735 ... P80371 20005802
    43 4v7k:Ac (3.6) BS01 rna ? GO:0003676 ... P80372 20005802
    44 4v7k:Ad (3.6) BS01 rna ? GO:0003723 ... P80373 20005802
    45 4v7k:Ae (3.6) BS01 rna ? GO:0003723 ... Q5SHQ5 20005802
    46 4v7k:Af (3.6) BS01 rna ? GO:0003735 ... Q5SLP8 20005802
    47 4v7k:Ag (3.6) BS01 rna ? GO:0000028 ... P17291 20005802
    48 4v7k:Ag (3.6) BS02 rna ? GO:0000028 ... P17291 20005802
    49 4v7k:Ah (3.6) BS01 rna N/A GO:0003735 ... N/A 20005802
    50 4v7k:Ai (3.6) BS01 rna ? GO:0000049 ... P80374 20005802
    51 4v7k:Aj (3.6) BS01 rna ? GO:0000049 ... Q5SHN7 20005802
    52 4v7k:Ak (3.6) BS01 rna ? GO:0003735 ... P80376 20005802
    53 4v7k:Al (3.6) BS01 rna ? GO:0000049 ... Q5SHN3 20005802
    54 4v7k:Am (3.6) BS01 rna ? GO:0000049 ... P80377 20005802
    55 4v7k:An (3.6) BS01 rna N/A GO:0003735 ... N/A 20005802
    56 4v7k:An (3.6) BS02 ZN N/A GO:0003735 ... N/A 20005802
    57 4v7k:Ao (3.6) BS01 rna ? GO:0003735 ... Q5SJ76 20005802
    58 4v7k:Ao (3.6) BS02 rna ? GO:0003735 ... Q5SJ76 20005802
    59 4v7k:Ap (3.6) BS01 rna ? GO:0003735 ... Q5SJH3 20005802
    60 4v7k:Aq (3.6) BS01 rna N/A GO:0003735 ... N/A 20005802
    61 4v7k:Ar (3.6) BS01 rna ? GO:0003735 ... Q5SLQ0 20005802
    62 4v7k:As (3.6) BS01 rna ? GO:0000028 ... Q5SHP2 20005802
    63 4v7k:At (3.6) BS01 rna ? GO:0003723 ... P80380 20005802
    64 4v7k:Ay (3.6) BS01 rna 3.1.-.- GO:0000976 ... P0C077 20005802
    65 4v7k:Ay (3.6) BS02 rna 3.1.-.- GO:0000976 ... P0C077 20005802
    66 4v7k:Ay (3.6) BS03 rna 3.1.-.- GO:0000976 ... P0C077 20005802
    67 4v7k:B0 (3.6) BS01 rna ? GO:0003735 ... P60493 20005802
    68 4v7k:B0 (3.6) BS02 rna ? GO:0003735 ... P60493 20005802
    69 4v7k:B1 (3.6) BS01 rna ? GO:0003735 ... P60494 20005802
    70 4v7k:B2 (3.6) BS01 rna ? GO:0003735 ... Q5SHP6 20005802
    71 4v7k:B3 (3.6) BS01 rna ? GO:0003735 ... Q5SHQ6 20005802
    72 4v7k:B3 (3.6) BS02 rna ? GO:0003735 ... Q5SHQ6 20005802
    73 4v7k:B4 (3.6) BS01 rna ? GO:0003735 ... Q5SJE1 20005802
    74 4v7k:B4 (3.6) BS02 ZN ? GO:0003735 ... Q5SJE1 20005802
    75 4v7k:B5 (3.6) BS01 rna ? GO:0003735 ... P80339 20005802
    76 4v7k:B6 (3.6) BS01 rna ? GO:0000049 ... P35871 20005802
    77 4v7k:B7 (3.6) BS01 rna ? GO:0003735 ... P80340 20005802
    78 4v7k:B8 (3.6) BS01 rna ? GO:0003735 ... Q5SKU1 20005802
    79 4v7k:B9 (3.6) BS01 rna ? GO:0003735 ... Q5SHR2 20005802
    80 4v7k:BC (3.6) BS01 rna ? GO:0000049 ... Q5SLP7 20005802
    81 4v7k:BC (3.6) BS02 rna ? GO:0000049 ... Q5SLP7 20005802
    82 4v7k:BD (3.6) BS01 rna ? GO:0002181 ... P60405 20005802
    83 4v7k:BD (3.6) BS02 MG ? GO:0002181 ... P60405 20005802
    84 4v7k:BE (3.6) BS01 rna ? GO:0003735 ... Q5SHN8 20005802
    85 4v7k:BF (3.6) BS01 rna ? GO:0003735 ... Q5SHN9 20005802
    86 4v7k:BF (3.6) BS02 MG ? GO:0003735 ... Q5SHN9 20005802
    87 4v7k:BG (3.6) BS01 rna ? GO:0000049 ... Q5SHQ0 20005802
    88 4v7k:BG (3.6) BS02 rna ? GO:0000049 ... Q5SHQ0 20005802
    89 4v7k:BG (3.6) BS03 rna ? GO:0000049 ... Q5SHQ0 20005802
    90 4v7k:BH (3.6) BS01 rna N/A GO:0003735 ... N/A 20005802
    91 4v7k:BI (3.6) BS01 rna ? GO:0003735 ... Q5SLQ1 20005802
    92 4v7k:BJ (3.6) BS01 rna ? GO:0003735 ... Q8VVE3 20005802
    93 4v7k:BN (3.6) BS01 rna ? GO:0003729 ... P60488 20005802
    94 4v7k:BO (3.6) BS01 rna ? GO:0003735 ... Q5SHP8 20005802
    95 4v7k:BO (3.6) BS02 rna ? GO:0003735 ... Q5SHP8 20005802
    96 4v7k:BP (3.6) BS01 rna ? GO:0003735 ... Q5SHQ7 20005802
    97 4v7k:BQ (3.6) BS01 rna ? GO:0000049 ... P60489 20005802
    98 4v7k:BQ (3.6) BS02 rna ? GO:0000049 ... P60489 20005802
    99 4v7k:BR (3.6) BS01 rna ? GO:0003735 ... Q9Z9H5 20005802
    100 4v7k:BR (3.6) BS02 MG ? GO:0003735 ... Q9Z9H5 20005802
    101 4v7k:BS (3.6) BS01 rna ? GO:0003735 ... Q5SHQ4 20005802
    102 4v7k:BS (3.6) BS02 rna ? GO:0003735 ... Q5SHQ4 20005802
    103 4v7k:BT (3.6) BS01 rna ? GO:0003735 ... P60490 20005802
    104 4v7k:BT (3.6) BS02 rna ? GO:0003735 ... P60490 20005802
    105 4v7k:BU (3.6) BS01 rna ? GO:0000027 ... P60491 20005802
    106 4v7k:BV (3.6) BS01 rna ? GO:0003723 ... P60492 20005802
    107 4v7k:BW (3.6) BS01 rna ? GO:0003735 ... Q5SHP3 20005802
    108 4v7k:BX (3.6) BS01 rna ? GO:0000027 ... Q5SHP0 20005802
    109 4v7k:BY (3.6) BS01 rna ? GO:0003723 ... Q5SHP9 20005802
    110 4v7k:BZ (3.6) BS01 rna ? GO:0003723 ... Q5SHZ1 20005802
    111 4v7k:BZ (3.6) BS02 rna ? GO:0003723 ... Q5SHZ1 20005802
    112 4v7k:Bb (3.6) BS01 rna ? GO:0003735 ... P80371 20005802
    113 4v7k:Bc (3.6) BS01 rna ? GO:0003676 ... P80372 20005802
    114 4v7k:Bd (3.6) BS01 rna ? GO:0003723 ... P80373 20005802
    115 4v7k:Bd (3.6) BS02 ZN ? GO:0003723 ... P80373 20005802
    116 4v7k:Be (3.6) BS01 rna ? GO:0003723 ... Q5SHQ5 20005802
    117 4v7k:Bf (3.6) BS01 rna ? GO:0003735 ... Q5SLP8 20005802
    118 4v7k:Bg (3.6) BS01 rna ? GO:0000028 ... P17291 20005802
    119 4v7k:Bg (3.6) BS02 rna ? GO:0000028 ... P17291 20005802
    120 4v7k:Bh (3.6) BS01 rna N/A GO:0003735 ... N/A 20005802
    121 4v7k:Bi (3.6) BS01 rna ? GO:0000049 ... P80374 20005802
    122 4v7k:Bj (3.6) BS01 rna ? GO:0000049 ... Q5SHN7 20005802
    123 4v7k:Bk (3.6) BS01 rna ? GO:0003735 ... P80376 20005802
    124 4v7k:Bl (3.6) BS01 rna ? GO:0000049 ... Q5SHN3 20005802
    125 4v7k:Bl (3.6) BS02 MG ? GO:0000049 ... Q5SHN3 20005802
    126 4v7k:Bm (3.6) BS01 rna ? GO:0000049 ... P80377 20005802
    127 4v7k:Bm (3.6) BS02 MG ? GO:0000049 ... P80377 20005802
    128 4v7k:Bn (3.6) BS01 rna N/A GO:0003735 ... N/A 20005802
    129 4v7k:Bn (3.6) BS02 ZN N/A GO:0003735 ... N/A 20005802
    130 4v7k:Bo (3.6) BS01 rna ? GO:0003735 ... Q5SJ76 20005802
    131 4v7k:Bo (3.6) BS02 rna ? GO:0003735 ... Q5SJ76 20005802
    132 4v7k:Bp (3.6) BS01 rna ? GO:0003735 ... Q5SJH3 20005802
    133 4v7k:Bq (3.6) BS01 rna N/A GO:0003735 ... N/A 20005802
    134 4v7k:Br (3.6) BS01 rna ? GO:0003735 ... Q5SLQ0 20005802
    135 4v7k:Bs (3.6) BS01 rna ? GO:0000028 ... Q5SHP2 20005802
    136 4v7k:Bt (3.6) BS01 rna ? GO:0003723 ... P80380 20005802
    137 4v7k:By (3.6) BS01 rna 3.1.-.- GO:0000976 ... P0C077 20005802
    138 4v7k:By (3.6) BS02 rna 3.1.-.- GO:0000976 ... P0C077 20005802
    139 4v7k:By (3.6) BS03 rna 3.1.-.- GO:0000976 ... P0C077 20005802
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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