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BioLiP
Download all results in tab-seperated text for 74 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 4v6o:AE (14.7) BS01 rna ? GO:0000028 ... P0A7V0 22467828
    2 4v6o:AE (14.7) BS02 rna ? GO:0000028 ... P0A7V0 22467828
    3 4v6o:AF (14.7) BS01 rna ? GO:0000028 ... P0A7V3 22467828
    4 4v6o:AF (14.7) BS02 rna ? GO:0000028 ... P0A7V3 22467828
    5 4v6o:AG (14.7) BS01 rna ? GO:0000028 ... P0A7V8 22467828
    6 4v6o:AG (14.7) BS02 rna ? GO:0000028 ... P0A7V8 22467828
    7 4v6o:AH (14.7) BS01 rna ? GO:0000028 ... P0A7W1 22467828
    8 4v6o:AH (14.7) BS02 rna ? GO:0000028 ... P0A7W1 22467828
    9 4v6o:AI (14.7) BS01 rna ? GO:0002181 ... P02358 22467828
    10 4v6o:AI (14.7) BS02 rna ? GO:0002181 ... P02358 22467828
    11 4v6o:AJ (14.7) BS01 rna ? GO:0000028 ... P02359 22467828
    12 4v6o:AJ (14.7) BS02 rna ? GO:0000028 ... P02359 22467828
    13 4v6o:AK (14.7) BS01 rna ? GO:0000028 ... P0A7W7 22467828
    14 4v6o:AL (14.7) BS01 rna ? GO:0000049 ... P0A7X3 22467828
    15 4v6o:AM (14.7) BS01 rna ? GO:0000049 ... P0A7R5 22467828
    16 4v6o:AN (14.7) BS01 rna ? GO:0002181 ... P0A7R9 22467828
    17 4v6o:AN (14.7) BS02 rna ? GO:0002181 ... P0A7R9 22467828
    18 4v6o:AO (14.7) BS01 rna ? GO:0000049 ... P0A7S3 22467828
    19 4v6o:AP (14.7) BS01 rna ? GO:0000049 ... P0A7S9 22467828
    20 4v6o:AP (14.7) BS02 rna ? GO:0000049 ... P0A7S9 22467828
    21 4v6o:AQ (14.7) BS01 rna ? GO:0000028 ... P0AG59 22467828
    22 4v6o:AR (14.7) BS01 rna ? GO:0003735 ... Q8X9M2 22467828
    23 4v6o:AR (14.7) BS02 rna ? GO:0003735 ... Q8X9M2 22467828
    24 4v6o:AS (14.7) BS01 rna ? GO:0000028 ... P0A7T3 22467828
    25 4v6o:AT (14.7) BS01 rna ? GO:0000028 ... P0AG63 22467828
    26 4v6o:AU (14.7) BS01 rna ? GO:0002181 ... P0A7T7 22467828
    27 4v6o:AU (14.7) BS02 rna ? GO:0002181 ... P0A7T7 22467828
    28 4v6o:AV (14.7) BS01 rna ? GO:0000028 ... P0A7U3 22467828
    29 4v6o:AW (14.7) BS01 rna ? GO:0000028 ... P0A7U7 22467828
    30 4v6o:AX (14.7) BS01 rna ? GO:0000028 ... P68679 22467828
    31 4v6o:AX (14.7) BS02 rna ? GO:0000028 ... P68679 22467828
    32 4v6o:B0 (14.7) BS01 rna ? GO:0000027 ... P0A7M6 22467828
    33 4v6o:B1 (14.7) BS01 rna ? GO:0000027 ... P0AG51 22467828
    34 4v6o:B1 (14.7) BS02 rna ? GO:0000027 ... P0AG51 22467828
    35 4v6o:B2 (14.7) BS01 rna ? GO:0002181 ... P0A7M9 22467828
    36 4v6o:B2 (14.7) BS02 rna ? GO:0002181 ... P0A7M9 22467828
    37 4v6o:B3 (14.7) BS01 rna ? GO:0000027 ... P0A7N4 22467828
    38 4v6o:B4 (14.7) BS01 rna ? GO:0000027 ... P0A7N9 22467828
    39 4v6o:B5 (14.7) BS01 rna ? GO:0002181 ... P0A7P5 22467828
    40 4v6o:B6 (14.7) BS01 rna ? GO:0002181 ... P0A7Q1 22467828
    41 4v6o:B7 (14.7) BS01 rna ? GO:0002181 ... P0A7Q6 22467828
    42 4v6o:BC (14.7) BS01 rna ? GO:0000027 ... P0A7L0 22467828
    43 4v6o:BD (14.7) BS01 rna ? GO:0000027 ... P60422 22467828
    44 4v6o:BE (14.7) BS01 rna ? GO:0000027 ... P60438 22467828
    45 4v6o:BF (14.7) BS01 rna ? GO:0001070 ... P60723 22467828
    46 4v6o:BG (14.7) BS01 rna ? GO:0000027 ... P62399 22467828
    47 4v6o:BG (14.7) BS02 rna ? GO:0000027 ... P62399 22467828
    48 4v6o:BH (14.7) BS01 rna ? GO:0000027 ... P0AG55 22467828
    49 4v6o:BI (14.7) BS01 rna ? GO:0002181 ... P0A7R1 22467828
    50 4v6o:BJ (14.7) BS01 rna ? GO:0002181 ... P0A7J3 22467828
    51 4v6o:BK (14.7) BS01 rna ? GO:0000027 ... P0A7J7 22467828
    52 4v6o:BL (14.7) BS01 rna ? GO:0002181 ... P0AA10 22467828
    53 4v6o:BM (14.7) BS01 rna ? GO:0002181 ... P0ADY3 22467828
    54 4v6o:BM (14.7) BS02 rna ? GO:0002181 ... P0ADY3 22467828
    55 4v6o:BN (14.7) BS01 rna ? GO:0002181 ... P02413 22467828
    56 4v6o:BO (14.7) BS01 rna ? GO:0000027 ... P0ADY7 22467828
    57 4v6o:BO (14.7) BS02 rna ? GO:0000027 ... P0ADY7 22467828
    58 4v6o:BO (14.7) BS03 rna ? GO:0000027 ... P0ADY7 22467828
    59 4v6o:BP (14.7) BS01 rna ? GO:0000027 ... P0AG44 22467828
    60 4v6o:BQ (14.7) BS01 rna ? GO:0002181 ... P0C018 22467828
    61 4v6o:BQ (14.7) BS02 rna ? GO:0002181 ... P0C018 22467828
    62 4v6o:BR (14.7) BS01 rna ? GO:0000027 ... P0A7K6 22467828
    63 4v6o:BR (14.7) BS02 rna ? GO:0000027 ... P0A7K6 22467828
    64 4v6o:BS (14.7) BS01 rna ? GO:0000027 ... P0A7L3 22467828
    65 4v6o:BT (14.7) BS01 rna ? GO:0002181 ... P0AG48 22467828
    66 4v6o:BU (14.7) BS01 rna ? GO:0002181 ... P61175 22467828
    67 4v6o:BV (14.7) BS01 rna ? GO:0000027 ... P0ADZ0 22467828
    68 4v6o:BW (14.7) BS01 rna ? GO:0000027 ... P60624 22467828
    69 4v6o:BX (14.7) BS01 rna ? GO:0000027 ... P68919 22467828
    70 4v6o:BX (14.7) BS02 rna ? GO:0000027 ... P68919 22467828
    71 4v6o:BY (14.7) BS01 rna ? GO:0000027 ... P0A7L8 22467828
    72 4v6o:BY (14.7) BS02 rna ? GO:0000027 ... P0A7L8 22467828
    73 4v6o:BY (14.7) BS03 rna ? GO:0000027 ... P0A7L8 22467828
    74 4v6o:BZ (14.7) BS01 rna ? GO:0000027 ... P0A7M2 22467828
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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