Home Research COVID-19 Services Publications People Teaching Job Opening News Forum --> -->
Online Services

●I-TASSER ●I-TASSER-MTD ●C-I-TASSER ●CR-I-TASSER ●QUARK ●C-QUARK ●LOMETS ●MUSTER ●CEthreader ●SEGMER ●DeepFold ●DeepFoldRNA ●FoldDesign ●COFACTOR ●COACH ●MetaGO ●TripletGO ●IonCom ●FG-MD ●ModRefiner ●REMO ●DEMO ●DEMO-EM ●DMFold ●SPRING ●COTH ●Threpp ●PEPPI ●BSpred ●ANGLOR ●EDock ●BSP-SLIM ●SAXSTER ●FUpred ●ThreaDom ●ThreaDomEx ●EvoDesign ●BindProf ●BindProfX ●SSIPe ●GPCR-I-TASSER ●MAGELLAN ●ResQ ●STRUM ●DAMpred

●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 50 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

    • Sort results by
    << < 1 > >>
    Go to page

    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 4v4b:AB (11.7) BS01 rna ? GO:0003735 ... P32905 14976550
    2 4v4b:AC (11.7) BS01 rna ? GO:0003723 ... P05750 14976550
    3 4v4b:AC (11.7) BS02 peptide ? GO:0003723 ... P05750 14976550
    4 4v4b:AD (11.7) BS01 rna ? GO:0000462 ... O13516 14976550
    5 4v4b:AE (11.7) BS01 rna ? GO:0003723 ... P25443 14976550
    6 4v4b:AG (11.7) BS01 rna ? GO:0003723 ... P26783 14976550
    7 4v4b:AH (11.7) BS01 rna N/A GO:0003735 ... N/A 14976550
    8 4v4b:AI (11.7) BS01 rna N/A GO:0003735 ... N/A 14976550
    9 4v4b:AJ (11.7) BS01 rna ? GO:0003723 ... P38701 14976550
    10 4v4b:AJ (11.7) BS02 peptide ? GO:0003723 ... P38701 14976550
    11 4v4b:AK (11.7) BS01 rna ? GO:0000028 ... P06367 14976550
    12 4v4b:AL (11.7) BS01 rna N/A GO:0003735 ... N/A 14976550
    13 4v4b:AM (11.7) BS01 rna N/A GO:0003676 ... N/A 14976550
    14 4v4b:AO (11.7) BS01 rna ? GO:0003735 ... P05756 14976550
    15 4v4b:AQ (11.7) BS01 rna N/A GO:0003735 ... N/A 14976550
    16 4v4b:AS (11.7) BS01 rna ? GO:0003723 ... Q01855 14976550
    17 4v4b:AT (11.7) BS01 rna 3.6.5.- GO:0003746 ... P32324 14976550
    18 4v4b:AT (11.7) BS02 rna 3.6.5.- GO:0003746 ... P32324 14976550
    19 4v4b:B0 (11.7) BS01 rna ? GO:0002181 ... P38061 14976550
    20 4v4b:B9 (11.7) BS01 rna N/A GO:0003735 ... N/A 14976550
    21 4v4b:BA (11.7) BS01 rna N/A GO:0003723 ... N/A 14976550
    22 4v4b:BB (11.7) BS01 rna N/A GO:0003735 ... N/A 14976550
    23 4v4b:BC (11.7) BS01 rna ? GO:0000027 ... P14126 14976550
    24 4v4b:BD (11.7) BS01 rna ? GO:0002181 ... P49626 14976550
    25 4v4b:BE (11.7) BS01 rna ? GO:0003735 ... P26321 14976550
    26 4v4b:BE (11.7) BS02 rna ? GO:0003735 ... P26321 14976550
    27 4v4b:BF (11.7) BS01 rna ? GO:0000463 ... P05737 14976550
    28 4v4b:BF (11.7) BS02 rna ? GO:0000463 ... P05737 14976550
    29 4v4b:BG (11.7) BS01 rna ? GO:0042254 ... P17076 14976550
    30 4v4b:BH (11.7) BS01 rna ? GO:0002181 ... P05738 14976550
    31 4v4b:BI (11.7) BS01 rna ? GO:0003735 ... P41805 14976550
    32 4v4b:BJ (11.7) BS01 rna N/A GO:0003735 ... N/A 14976550
    33 4v4b:BJ (11.7) BS02 rna N/A GO:0003735 ... N/A 14976550
    34 4v4b:BK (11.7) BS01 rna N/A GO:0003735 ... N/A 14976550
    35 4v4b:BL (11.7) BS01 rna ? GO:0002181 ... P05748 14976550
    36 4v4b:BM (11.7) BS01 rna ? GO:0003735 ... P26784 14976550
    37 4v4b:BN (11.7) BS01 rna ? GO:0000448 ... P05740 14976550
    38 4v4b:BO (11.7) BS01 rna N/A GO:0003735 ... N/A 14976550
    39 4v4b:BP (11.7) BS01 rna N/A GO:0003723 ... N/A 14976550
    40 4v4b:BQ (11.7) BS01 rna ? GO:0003735 ... Q02753 14976550
    41 4v4b:BR (11.7) BS01 rna N/A GO:0003735 ... N/A 14976550
    42 4v4b:BR (11.7) BS02 rna N/A GO:0003735 ... N/A 14976550
    43 4v4b:BS (11.7) BS01 rna ? N/A P04449 14976550
    44 4v4b:BT (11.7) BS01 rna ? GO:0003735 ... P04456 14976550
    45 4v4b:BU (11.7) BS01 rna ? GO:0002181 ... P05743 14976550
    46 4v4b:BV (11.7) BS01 rna ? GO:0002181 ... P02406 14976550
    47 4v4b:BW (11.7) BS01 rna N/A GO:0003735 ... N/A 14976550
    48 4v4b:BX (11.7) BS01 rna N/A GO:0000463 ... N/A 14976550
    49 4v4b:BY (11.7) BS01 rna ? GO:0000448 ... P49166 14976550
    50 4v4b:BZ (11.7) BS01 rna N/A GO:0003735 ... N/A 14976550
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

    • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218