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●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 136 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 4rkm:A (2.2) BS01 CU1 1.8.99.- GO:0016002 ... Q7MSJ8 25642962
    2 4rkm:A (2.2) BS02 BU3 1.8.99.- GO:0016002 ... Q7MSJ8 25642962
    3 4rkm:A (2.2) BS03 HEM 1.8.99.- GO:0016002 ... Q7MSJ8 25642962
    4 4rkm:A (2.2) BS04 HEM 1.8.99.- GO:0016002 ... Q7MSJ8 25642962
    5 4rkm:A (2.2) BS05 HEM 1.8.99.- GO:0016002 ... Q7MSJ8 25642962
    6 4rkm:A (2.2) BS06 HEM 1.8.99.- GO:0016002 ... Q7MSJ8 25642962
    7 4rkm:A (2.2) BS07 HEM 1.8.99.- GO:0016002 ... Q7MSJ8 25642962
    8 4rkm:A (2.2) BS08 HEM 1.8.99.- GO:0016002 ... Q7MSJ8 25642962
    9 4rkm:A (2.2) BS09 HEM 1.8.99.- GO:0016002 ... Q7MSJ8 25642962
    10 4rkm:A (2.2) BS10 HEM 1.8.99.- GO:0016002 ... Q7MSJ8 25642962
    11 4rkm:A (2.2) BS11 HEM 1.8.99.- GO:0016002 ... Q7MSJ8 25642962
    12 4rkm:B (2.2) BS01 HEM 1.8.99.- GO:0016002 ... Q7MSJ8 25642962
    13 4rkm:B (2.2) BS02 CU1 1.8.99.- GO:0016002 ... Q7MSJ8 25642962
    14 4rkm:B (2.2) BS03 BU3 1.8.99.- GO:0016002 ... Q7MSJ8 25642962
    15 4rkm:B (2.2) BS04 BU3 1.8.99.- GO:0016002 ... Q7MSJ8 25642962
    16 4rkm:B (2.2) BS05 HEM 1.8.99.- GO:0016002 ... Q7MSJ8 25642962
    17 4rkm:B (2.2) BS06 HEM 1.8.99.- GO:0016002 ... Q7MSJ8 25642962
    18 4rkm:B (2.2) BS07 HEM 1.8.99.- GO:0016002 ... Q7MSJ8 25642962
    19 4rkm:B (2.2) BS08 HEM 1.8.99.- GO:0016002 ... Q7MSJ8 25642962
    20 4rkm:B (2.2) BS09 HEM 1.8.99.- GO:0016002 ... Q7MSJ8 25642962
    21 4rkm:B (2.2) BS10 HEM 1.8.99.- GO:0016002 ... Q7MSJ8 25642962
    22 4rkm:B (2.2) BS11 HEM 1.8.99.- GO:0016002 ... Q7MSJ8 25642962
    23 4rkm:B (2.2) BS12 HEM 1.8.99.- GO:0016002 ... Q7MSJ8 25642962
    24 4rkm:C (2.2) BS01 HEM 1.8.99.- GO:0016002 ... Q7MSJ8 25642962
    25 4rkm:C (2.2) BS02 CU1 1.8.99.- GO:0016002 ... Q7MSJ8 25642962
    26 4rkm:C (2.2) BS03 BU3 1.8.99.- GO:0016002 ... Q7MSJ8 25642962
    27 4rkm:C (2.2) BS04 HEM 1.8.99.- GO:0016002 ... Q7MSJ8 25642962
    28 4rkm:C (2.2) BS05 HEM 1.8.99.- GO:0016002 ... Q7MSJ8 25642962
    29 4rkm:C (2.2) BS06 HEM 1.8.99.- GO:0016002 ... Q7MSJ8 25642962
    30 4rkm:C (2.2) BS07 HEM 1.8.99.- GO:0016002 ... Q7MSJ8 25642962
    31 4rkm:C (2.2) BS08 HEM 1.8.99.- GO:0016002 ... Q7MSJ8 25642962
    32 4rkm:C (2.2) BS09 HEM 1.8.99.- GO:0016002 ... Q7MSJ8 25642962
    33 4rkm:C (2.2) BS10 HEM 1.8.99.- GO:0016002 ... Q7MSJ8 25642962
    34 4rkm:C (2.2) BS11 HEM 1.8.99.- GO:0016002 ... Q7MSJ8 25642962
    35 4rkm:D (2.2) BS01 CU1 1.8.99.- GO:0016002 ... Q7MSJ8 25642962
    36 4rkm:D (2.2) BS02 BU3 1.8.99.- GO:0016002 ... Q7MSJ8 25642962
    37 4rkm:D (2.2) BS03 HEM 1.8.99.- GO:0016002 ... Q7MSJ8 25642962
    38 4rkm:D (2.2) BS04 HEM 1.8.99.- GO:0016002 ... Q7MSJ8 25642962
    39 4rkm:D (2.2) BS05 HEM 1.8.99.- GO:0016002 ... Q7MSJ8 25642962
    40 4rkm:D (2.2) BS06 HEM 1.8.99.- GO:0016002 ... Q7MSJ8 25642962
    41 4rkm:D (2.2) BS07 HEM 1.8.99.- GO:0016002 ... Q7MSJ8 25642962
    42 4rkm:D (2.2) BS08 HEM 1.8.99.- GO:0016002 ... Q7MSJ8 25642962
    43 4rkm:D (2.2) BS09 HEM 1.8.99.- GO:0016002 ... Q7MSJ8 25642962
    44 4rkm:D (2.2) BS10 HEM 1.8.99.- GO:0016002 ... Q7MSJ8 25642962
    45 4rkm:D (2.2) BS11 HEM 1.8.99.- GO:0016002 ... Q7MSJ8 25642962
    46 4rkm:E (2.2) BS01 CU1 1.8.99.- GO:0016002 ... Q7MSJ8 25642962
    47 4rkm:E (2.2) BS02 BU3 1.8.99.- GO:0016002 ... Q7MSJ8 25642962
    48 4rkm:E (2.2) BS03 BU3 1.8.99.- GO:0016002 ... Q7MSJ8 25642962
    49 4rkm:E (2.2) BS04 HEM 1.8.99.- GO:0016002 ... Q7MSJ8 25642962
    50 4rkm:E (2.2) BS05 HEM 1.8.99.- GO:0016002 ... Q7MSJ8 25642962
    51 4rkm:E (2.2) BS06 HEM 1.8.99.- GO:0016002 ... Q7MSJ8 25642962
    52 4rkm:E (2.2) BS07 HEM 1.8.99.- GO:0016002 ... Q7MSJ8 25642962
    53 4rkm:E (2.2) BS08 HEM 1.8.99.- GO:0016002 ... Q7MSJ8 25642962
    54 4rkm:E (2.2) BS09 HEM 1.8.99.- GO:0016002 ... Q7MSJ8 25642962
    55 4rkm:E (2.2) BS10 HEM 1.8.99.- GO:0016002 ... Q7MSJ8 25642962
    56 4rkm:E (2.2) BS11 HEM 1.8.99.- GO:0016002 ... Q7MSJ8 25642962
    57 4rkm:E (2.2) BS12 HEM 1.8.99.- GO:0016002 ... Q7MSJ8 25642962
    58 4rkm:F (2.2) BS01 CU1 1.8.99.- GO:0016002 ... Q7MSJ8 25642962
    59 4rkm:F (2.2) BS02 BU3 1.8.99.- GO:0016002 ... Q7MSJ8 25642962
    60 4rkm:F (2.2) BS03 HEM 1.8.99.- GO:0016002 ... Q7MSJ8 25642962
    61 4rkm:F (2.2) BS04 HEM 1.8.99.- GO:0016002 ... Q7MSJ8 25642962
    62 4rkm:F (2.2) BS05 HEM 1.8.99.- GO:0016002 ... Q7MSJ8 25642962
    63 4rkm:F (2.2) BS06 HEM 1.8.99.- GO:0016002 ... Q7MSJ8 25642962
    64 4rkm:F (2.2) BS07 HEM 1.8.99.- GO:0016002 ... Q7MSJ8 25642962
    65 4rkm:F (2.2) BS08 HEM 1.8.99.- GO:0016002 ... Q7MSJ8 25642962
    66 4rkm:F (2.2) BS09 HEM 1.8.99.- GO:0016002 ... Q7MSJ8 25642962
    67 4rkm:F (2.2) BS10 HEM 1.8.99.- GO:0016002 ... Q7MSJ8 25642962
    68 4rkm:F (2.2) BS11 HEM 1.8.99.- GO:0016002 ... Q7MSJ8 25642962
    69 4rkm:G (2.2) BS01 HEM 1.8.99.- GO:0016002 ... Q7MSJ8 25642962
    70 4rkm:G (2.2) BS02 CU1 1.8.99.- GO:0016002 ... Q7MSJ8 25642962
    71 4rkm:G (2.2) BS03 BU3 1.8.99.- GO:0016002 ... Q7MSJ8 25642962
    72 4rkm:G (2.2) BS04 HEM 1.8.99.- GO:0016002 ... Q7MSJ8 25642962
    73 4rkm:G (2.2) BS05 HEM 1.8.99.- GO:0016002 ... Q7MSJ8 25642962
    74 4rkm:G (2.2) BS06 HEM 1.8.99.- GO:0016002 ... Q7MSJ8 25642962
    75 4rkm:G (2.2) BS07 HEM 1.8.99.- GO:0016002 ... Q7MSJ8 25642962
    76 4rkm:G (2.2) BS08 HEM 1.8.99.- GO:0016002 ... Q7MSJ8 25642962
    77 4rkm:G (2.2) BS09 HEM 1.8.99.- GO:0016002 ... Q7MSJ8 25642962
    78 4rkm:G (2.2) BS10 HEM 1.8.99.- GO:0016002 ... Q7MSJ8 25642962
    79 4rkm:G (2.2) BS11 HEM 1.8.99.- GO:0016002 ... Q7MSJ8 25642962
    80 4rkm:H (2.2) BS01 CU1 1.8.99.- GO:0016002 ... Q7MSJ8 25642962
    81 4rkm:H (2.2) BS02 BU3 1.8.99.- GO:0016002 ... Q7MSJ8 25642962
    82 4rkm:H (2.2) BS03 BU3 1.8.99.- GO:0016002 ... Q7MSJ8 25642962
    83 4rkm:H (2.2) BS04 HEM 1.8.99.- GO:0016002 ... Q7MSJ8 25642962
    84 4rkm:H (2.2) BS05 HEM 1.8.99.- GO:0016002 ... Q7MSJ8 25642962
    85 4rkm:H (2.2) BS06 HEM 1.8.99.- GO:0016002 ... Q7MSJ8 25642962
    86 4rkm:H (2.2) BS07 HEM 1.8.99.- GO:0016002 ... Q7MSJ8 25642962
    87 4rkm:H (2.2) BS08 HEM 1.8.99.- GO:0016002 ... Q7MSJ8 25642962
    88 4rkm:H (2.2) BS09 HEM 1.8.99.- GO:0016002 ... Q7MSJ8 25642962
    89 4rkm:H (2.2) BS10 HEM 1.8.99.- GO:0016002 ... Q7MSJ8 25642962
    90 4rkm:H (2.2) BS11 HEM 1.8.99.- GO:0016002 ... Q7MSJ8 25642962
    91 4rkm:H (2.2) BS12 HEM 1.8.99.- GO:0016002 ... Q7MSJ8 25642962
    92 4rkm:I (2.2) BS01 BU3 1.8.99.- GO:0016002 ... Q7MSJ8 25642962
    93 4rkm:I (2.2) BS02 HEM 1.8.99.- GO:0016002 ... Q7MSJ8 25642962
    94 4rkm:I (2.2) BS03 CU1 1.8.99.- GO:0016002 ... Q7MSJ8 25642962
    95 4rkm:I (2.2) BS04 BU3 1.8.99.- GO:0016002 ... Q7MSJ8 25642962
    96 4rkm:I (2.2) BS05 HEM 1.8.99.- GO:0016002 ... Q7MSJ8 25642962
    97 4rkm:I (2.2) BS06 HEM 1.8.99.- GO:0016002 ... Q7MSJ8 25642962
    98 4rkm:I (2.2) BS07 HEM 1.8.99.- GO:0016002 ... Q7MSJ8 25642962
    99 4rkm:I (2.2) BS08 HEM 1.8.99.- GO:0016002 ... Q7MSJ8 25642962
    100 4rkm:I (2.2) BS09 HEM 1.8.99.- GO:0016002 ... Q7MSJ8 25642962
    101 4rkm:I (2.2) BS10 HEM 1.8.99.- GO:0016002 ... Q7MSJ8 25642962
    102 4rkm:I (2.2) BS11 HEM 1.8.99.- GO:0016002 ... Q7MSJ8 25642962
    103 4rkm:I (2.2) BS12 HEM 1.8.99.- GO:0016002 ... Q7MSJ8 25642962
    104 4rkm:J (2.2) BS01 HEM 1.8.99.- GO:0016002 ... Q7MSJ8 25642962
    105 4rkm:J (2.2) BS02 CU1 1.8.99.- GO:0016002 ... Q7MSJ8 25642962
    106 4rkm:J (2.2) BS03 HEM 1.8.99.- GO:0016002 ... Q7MSJ8 25642962
    107 4rkm:J (2.2) BS04 HEM 1.8.99.- GO:0016002 ... Q7MSJ8 25642962
    108 4rkm:J (2.2) BS05 HEM 1.8.99.- GO:0016002 ... Q7MSJ8 25642962
    109 4rkm:J (2.2) BS06 HEM 1.8.99.- GO:0016002 ... Q7MSJ8 25642962
    110 4rkm:J (2.2) BS07 HEM 1.8.99.- GO:0016002 ... Q7MSJ8 25642962
    111 4rkm:J (2.2) BS08 HEM 1.8.99.- GO:0016002 ... Q7MSJ8 25642962
    112 4rkm:J (2.2) BS09 HEM 1.8.99.- GO:0016002 ... Q7MSJ8 25642962
    113 4rkm:J (2.2) BS10 HEM 1.8.99.- GO:0016002 ... Q7MSJ8 25642962
    114 4rkm:K (2.2) BS01 HEM 1.8.99.- GO:0016002 ... Q7MSJ8 25642962
    115 4rkm:K (2.2) BS02 CU1 1.8.99.- GO:0016002 ... Q7MSJ8 25642962
    116 4rkm:K (2.2) BS03 BU3 1.8.99.- GO:0016002 ... Q7MSJ8 25642962
    117 4rkm:K (2.2) BS04 HEM 1.8.99.- GO:0016002 ... Q7MSJ8 25642962
    118 4rkm:K (2.2) BS05 HEM 1.8.99.- GO:0016002 ... Q7MSJ8 25642962
    119 4rkm:K (2.2) BS06 HEM 1.8.99.- GO:0016002 ... Q7MSJ8 25642962
    120 4rkm:K (2.2) BS07 HEM 1.8.99.- GO:0016002 ... Q7MSJ8 25642962
    121 4rkm:K (2.2) BS08 HEM 1.8.99.- GO:0016002 ... Q7MSJ8 25642962
    122 4rkm:K (2.2) BS09 HEM 1.8.99.- GO:0016002 ... Q7MSJ8 25642962
    123 4rkm:K (2.2) BS10 HEM 1.8.99.- GO:0016002 ... Q7MSJ8 25642962
    124 4rkm:K (2.2) BS11 HEM 1.8.99.- GO:0016002 ... Q7MSJ8 25642962
    125 4rkm:L (2.2) BS01 HEM 1.8.99.- GO:0016002 ... Q7MSJ8 25642962
    126 4rkm:L (2.2) BS02 CU1 1.8.99.- GO:0016002 ... Q7MSJ8 25642962
    127 4rkm:L (2.2) BS03 BU3 1.8.99.- GO:0016002 ... Q7MSJ8 25642962
    128 4rkm:L (2.2) BS04 BU3 1.8.99.- GO:0016002 ... Q7MSJ8 25642962
    129 4rkm:L (2.2) BS05 HEM 1.8.99.- GO:0016002 ... Q7MSJ8 25642962
    130 4rkm:L (2.2) BS06 HEM 1.8.99.- GO:0016002 ... Q7MSJ8 25642962
    131 4rkm:L (2.2) BS07 HEM 1.8.99.- GO:0016002 ... Q7MSJ8 25642962
    132 4rkm:L (2.2) BS08 HEM 1.8.99.- GO:0016002 ... Q7MSJ8 25642962
    133 4rkm:L (2.2) BS09 HEM 1.8.99.- GO:0016002 ... Q7MSJ8 25642962
    134 4rkm:L (2.2) BS10 HEM 1.8.99.- GO:0016002 ... Q7MSJ8 25642962
    135 4rkm:L (2.2) BS11 HEM 1.8.99.- GO:0016002 ... Q7MSJ8 25642962
    136 4rkm:L (2.2) BS12 HEM 1.8.99.- GO:0016002 ... Q7MSJ8 25642962
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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