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BioLiP
Download all results in tab-seperated text for 12 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 4r02:G (2.5) BS01 MG 3.4.25.1 GO:0000502 ... P21243 25087721
    2 4r02:I (2.5) BS01 MG 3.4.25.1 GO:0000502 ... P25451 25087721
    3 4r02:I (2.5) BS02 MG 3.4.25.1 GO:0000502 ... P25451 25087721
    4 4r02:J (2.5) BS01 MG 3.4.25.1 GO:0000502 ... P22141 25087721
    5 4r02:K (2.5) BS01 3E5 3.4.25.1 GO:0004298 ... P30656 25087721 PDBbind: -logKd/Ki=7.41, IC50=39nM
    6 4r02:K (2.5) BS02 MG 3.4.25.1 GO:0004298 ... P30656 25087721
    7 4r02:L (2.5) BS01 3E5 3.4.25.1 GO:0000502 ... P23724 25087721 PDBbind: -logKd/Ki=7.41, IC50=39nM
    8 4r02:N (2.5) BS01 MG 3.4.25.1 GO:0000502 ... P38624 25087721
    9 4r02:V (2.5) BS01 MG 3.4.25.1 GO:0004298 ... P25043 25087721
    10 4r02:Y (2.5) BS01 3E5 3.4.25.1 GO:0004298 ... P30656 25087721
    11 4r02:Y (2.5) BS02 MG 3.4.25.1 GO:0004298 ... P30656 25087721
    12 4r02:Z (2.5) BS01 MG 3.4.25.1 GO:0000502 ... P23724 25087721
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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