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BioLiP
Download all results in tab-seperated text for 24 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 3m2u:A (1.4) BS01 F43 2.8.4.1 GO:0005737 ... P11558 20707311
    2 3m2u:A (1.4) BS02 TP7 2.8.4.1 GO:0005737 ... P11558 20707311
    3 3m2u:A (1.4) BS03 COM 2.8.4.1 GO:0005737 ... P11558 20707311
    4 3m2u:A (1.4) BS04 TXZ 2.8.4.1 GO:0005737 ... P11558 20707311 PDBbind: -logKd/Ki=7.00, Ki=0.1uM
    5 3m2u:A (1.4) BS05 F43 2.8.4.1 GO:0005737 ... P11558 20707311
    6 3m2u:A (1.4) BS06 TP7 2.8.4.1 GO:0005737 ... P11558 20707311
    7 3m2u:A (1.4) BS07 TXZ 2.8.4.1 GO:0005737 ... P11558 20707311 PDBbind: -logKd/Ki=7.00, Ki=0.1uM
    8 3m2u:B (1.4) BS01 TP7 2.8.4.1 GO:0005737 ... P11560 20707311
    9 3m2u:B (1.4) BS02 COM 2.8.4.1 GO:0005737 ... P11560 20707311
    10 3m2u:B (1.4) BS03 TXZ 2.8.4.1 GO:0005737 ... P11560 20707311 PDBbind: -logKd/Ki=7.00, Ki=0.1uM
    11 3m2u:B (1.4) BS04 F43 2.8.4.1 GO:0005737 ... P11560 20707311
    12 3m2u:C (1.4) BS01 F43 2.8.4.1 GO:0005737 ... P11562 20707311
    13 3m2u:D (1.4) BS01 F43 2.8.4.1 GO:0005737 ... P11558 20707311
    14 3m2u:D (1.4) BS02 TP7 2.8.4.1 GO:0005737 ... P11558 20707311
    15 3m2u:D (1.4) BS03 TXZ 2.8.4.1 GO:0005737 ... P11558 20707311 PDBbind: -logKd/Ki=7.00, Ki=0.1uM
    16 3m2u:D (1.4) BS04 F43 2.8.4.1 GO:0005737 ... P11558 20707311
    17 3m2u:D (1.4) BS05 TP7 2.8.4.1 GO:0005737 ... P11558 20707311
    18 3m2u:D (1.4) BS06 COM 2.8.4.1 GO:0005737 ... P11558 20707311
    19 3m2u:D (1.4) BS07 TXZ 2.8.4.1 GO:0005737 ... P11558 20707311 PDBbind: -logKd/Ki=7.00, Ki=0.1uM
    20 3m2u:E (1.4) BS01 F43 2.8.4.1 GO:0005737 ... P11560 20707311
    21 3m2u:E (1.4) BS02 TP7 2.8.4.1 GO:0005737 ... P11560 20707311
    22 3m2u:E (1.4) BS03 COM 2.8.4.1 GO:0005737 ... P11560 20707311
    23 3m2u:E (1.4) BS04 TXZ 2.8.4.1 GO:0005737 ... P11560 20707311
    24 3m2u:F (1.4) BS01 F43 2.8.4.1 GO:0005737 ... P11562 20707311
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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