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BioLiP
Download all results in tab-seperated text for 56 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 3l2y:A (2.7) BS01 CA ? GO:0001849 ... P02741 21360619
    2 3l2y:A (2.7) BS02 CA ? GO:0001849 ... P02741 21360619
    3 3l2y:A (2.7) BS03 OPE ? GO:0001849 ... P02741 21360619 PDBbind: -logKd/Ki=4.49, Kd=32.07uM
    4 3l2y:B (2.7) BS01 OPE ? GO:0001849 ... P02741 21360619
    5 3l2y:B (2.7) BS02 CA ? GO:0001849 ... P02741 21360619
    6 3l2y:B (2.7) BS03 CA ? GO:0001849 ... P02741 21360619
    7 3l2y:C (2.7) BS01 OPE ? GO:0001849 ... P02741 21360619
    8 3l2y:C (2.7) BS02 CA ? GO:0001849 ... P02741 21360619
    9 3l2y:C (2.7) BS03 CA ? GO:0001849 ... P02741 21360619
    10 3l2y:D (2.7) BS01 OPE ? GO:0001849 ... P02741 21360619
    11 3l2y:D (2.7) BS02 CA ? GO:0001849 ... P02741 21360619
    12 3l2y:D (2.7) BS03 CA ? GO:0001849 ... P02741 21360619
    13 3l2y:E (2.7) BS01 OPE ? GO:0001849 ... P02741 21360619
    14 3l2y:E (2.7) BS02 CA ? GO:0001849 ... P02741 21360619
    15 3l2y:E (2.7) BS03 CA ? GO:0001849 ... P02741 21360619
    16 3l2y:F (2.7) BS01 OPE ? GO:0001849 ... P02741 21360619
    17 3l2y:F (2.7) BS02 CA ? GO:0001849 ... P02741 21360619
    18 3l2y:F (2.7) BS03 CA ? GO:0001849 ... P02741 21360619
    19 3l2y:G (2.7) BS01 CA ? GO:0001849 ... P02741 21360619
    20 3l2y:G (2.7) BS02 CA ? GO:0001849 ... P02741 21360619
    21 3l2y:H (2.7) BS01 OPE ? GO:0001849 ... P02741 21360619
    22 3l2y:H (2.7) BS02 CA ? GO:0001849 ... P02741 21360619
    23 3l2y:H (2.7) BS03 CA ? GO:0001849 ... P02741 21360619
    24 3l2y:I (2.7) BS01 OPE ? GO:0001849 ... P02741 21360619
    25 3l2y:I (2.7) BS02 CA ? GO:0001849 ... P02741 21360619
    26 3l2y:I (2.7) BS03 CA ? GO:0001849 ... P02741 21360619
    27 3l2y:J (2.7) BS01 OPE ? GO:0001849 ... P02741 21360619
    28 3l2y:J (2.7) BS02 CA ? GO:0001849 ... P02741 21360619
    29 3l2y:J (2.7) BS03 CA ? GO:0001849 ... P02741 21360619
    30 3l2y:K (2.7) BS01 CA ? GO:0001849 ... P02741 21360619
    31 3l2y:K (2.7) BS02 CA ? GO:0001849 ... P02741 21360619
    32 3l2y:L (2.7) BS01 CA ? GO:0001849 ... P02741 21360619
    33 3l2y:L (2.7) BS02 CA ? GO:0001849 ... P02741 21360619
    34 3l2y:M (2.7) BS01 OPE ? GO:0001849 ... P02741 21360619
    35 3l2y:M (2.7) BS02 CA ? GO:0001849 ... P02741 21360619
    36 3l2y:M (2.7) BS03 CA ? GO:0001849 ... P02741 21360619
    37 3l2y:N (2.7) BS01 OPE ? GO:0001849 ... P02741 21360619
    38 3l2y:N (2.7) BS02 CA ? GO:0001849 ... P02741 21360619
    39 3l2y:N (2.7) BS03 CA ? GO:0001849 ... P02741 21360619
    40 3l2y:O (2.7) BS01 OPE ? GO:0001849 ... P02741 21360619
    41 3l2y:O (2.7) BS02 CA ? GO:0001849 ... P02741 21360619
    42 3l2y:O (2.7) BS03 CA ? GO:0001849 ... P02741 21360619
    43 3l2y:P (2.7) BS01 OPE ? GO:0001849 ... P02741 21360619
    44 3l2y:P (2.7) BS02 CA ? GO:0001849 ... P02741 21360619
    45 3l2y:P (2.7) BS03 CA ? GO:0001849 ... P02741 21360619
    46 3l2y:Q (2.7) BS01 OPE ? GO:0001849 ... P02741 21360619
    47 3l2y:Q (2.7) BS02 CA ? GO:0001849 ... P02741 21360619
    48 3l2y:Q (2.7) BS03 CA ? GO:0001849 ... P02741 21360619
    49 3l2y:R (2.7) BS01 OPE ? GO:0001849 ... P02741 21360619
    50 3l2y:R (2.7) BS02 CA ? GO:0001849 ... P02741 21360619
    51 3l2y:R (2.7) BS03 CA ? GO:0001849 ... P02741 21360619
    52 3l2y:S (2.7) BS01 CA ? GO:0001849 ... P02741 21360619
    53 3l2y:S (2.7) BS02 CA ? GO:0001849 ... P02741 21360619
    54 3l2y:T (2.7) BS01 OPE ? GO:0001849 ... P02741 21360619
    55 3l2y:T (2.7) BS02 CA ? GO:0001849 ... P02741 21360619
    56 3l2y:T (2.7) BS03 CA ? GO:0001849 ... P02741 21360619
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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