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BioLiP
Download all results in tab-seperated text for 107 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 3jan:6 (3.75) BS01 rna N/A GO:0003723 ... N/A 26158507
    2 3jan:9 (3.75) BS01 rna N/A GO:0006614 ... N/A 26158507
    3 3jan:A (3.75) BS01 rna N/A GO:0003735 ... N/A 26158507
    4 3jan:B (3.75) BS01 rna N/A GO:0003735 ... N/A 26158507
    5 3jan:C (3.75) BS01 rna N/A GO:0003735 ... N/A 26158507
    6 3jan:C (3.75) BS02 rna N/A GO:0003735 ... N/A 26158507
    7 3jan:D (3.75) BS01 rna N/A GO:0003735 ... N/A 26158507
    8 3jan:D (3.75) BS02 rna N/A GO:0003735 ... N/A 26158507
    9 3jan:E (3.75) BS01 rna N/A GO:0003735 ... N/A 26158507
    10 3jan:F (3.75) BS01 rna N/A GO:0000463 ... N/A 26158507
    11 3jan:F (3.75) BS02 rna N/A GO:0000463 ... N/A 26158507
    12 3jan:G (3.75) BS01 rna N/A GO:0042254 ... N/A 26158507
    13 3jan:G (3.75) BS02 rna N/A GO:0042254 ... N/A 26158507
    14 3jan:H (3.75) BS01 rna N/A GO:0003735 ... N/A 26158507
    15 3jan:I (3.75) BS01 rna N/A GO:0003735 ... N/A 26158507
    16 3jan:I (3.75) BS02 rna N/A GO:0003735 ... N/A 26158507
    17 3jan:J (3.75) BS01 rna N/A GO:0003735 ... N/A 26158507
    18 3jan:J (3.75) BS02 rna N/A GO:0003735 ... N/A 26158507
    19 3jan:J (3.75) BS03 rna N/A GO:0003735 ... N/A 26158507
    20 3jan:K (3.75) BS01 rna N/A GO:0003735 ... N/A 26158507
    21 3jan:K (3.75) BS02 rna N/A GO:0003735 ... N/A 26158507
    22 3jan:L (3.75) BS01 rna N/A GO:0003735 ... N/A 26158507
    23 3jan:L (3.75) BS02 rna N/A GO:0003735 ... N/A 26158507
    24 3jan:M (3.75) BS01 rna N/A GO:0003723 ... N/A 26158507
    25 3jan:N (3.75) BS01 rna N/A GO:0003735 ... N/A 26158507
    26 3jan:N (3.75) BS02 rna N/A GO:0003735 ... N/A 26158507
    27 3jan:O (3.75) BS01 rna N/A GO:0003735 ... N/A 26158507
    28 3jan:P (3.75) BS01 rna N/A GO:0003735 ... N/A 26158507
    29 3jan:P (3.75) BS02 rna N/A GO:0003735 ... N/A 26158507
    30 3jan:Q (3.75) BS01 rna N/A GO:0003735 ... N/A 26158507
    31 3jan:R (3.75) BS01 rna N/A GO:0003723 ... N/A 26158507
    32 3jan:R (3.75) BS02 rna N/A GO:0003723 ... N/A 26158507
    33 3jan:S (3.75) BS01 rna N/A GO:0003735 ... N/A 26158507
    34 3jan:S (3.75) BS02 rna N/A GO:0003735 ... N/A 26158507
    35 3jan:S1 (3.75) BS01 rna N/A GO:0006614 ... N/A 26158507
    36 3jan:S4 (3.75) BS01 rna N/A GO:0005786 ... N/A 26158507
    37 3jan:S4 (3.75) BS02 rna N/A GO:0005786 ... N/A 26158507
    38 3jan:SA (3.75) BS01 rna N/A GO:0003735 ... N/A 26158507
    39 3jan:SB (3.75) BS01 rna N/A GO:0003735 ... N/A 26158507
    40 3jan:SC (3.75) BS01 rna N/A GO:0003723 ... N/A 26158507
    41 3jan:SD (3.75) BS01 rna N/A GO:0003723 ... N/A 26158507
    42 3jan:SE (3.75) BS01 rna N/A GO:0003723 ... N/A 26158507
    43 3jan:SF (3.75) BS01 rna N/A GO:0003723 ... N/A 26158507
    44 3jan:SG (3.75) BS01 rna N/A GO:0003735 ... N/A 26158507
    45 3jan:SH (3.75) BS01 rna N/A GO:0003735 ... N/A 26158507
    46 3jan:SI (3.75) BS01 rna N/A GO:0003735 ... N/A 26158507
    47 3jan:SJ (3.75) BS01 rna N/A GO:0003723 ... N/A 26158507
    48 3jan:SK (3.75) BS01 rna N/A N/A N/A 26158507
    49 3jan:SL (3.75) BS01 rna N/A GO:0003735 ... N/A 26158507
    50 3jan:SL (3.75) BS02 MG N/A GO:0003735 ... N/A 26158507
    51 3jan:SM (3.75) BS01 rna N/A GO:0003735 ... N/A 26158507
    52 3jan:SN (3.75) BS01 rna N/A GO:0003735 ... N/A 26158507
    53 3jan:SN (3.75) BS02 rna N/A GO:0003735 ... N/A 26158507
    54 3jan:SO (3.75) BS01 rna N/A GO:0003735 ... N/A 26158507
    55 3jan:SP (3.75) BS01 rna N/A GO:0003735 ... N/A 26158507
    56 3jan:SQ (3.75) BS01 rna N/A GO:0003735 ... N/A 26158507
    57 3jan:SR (3.75) BS01 rna N/A GO:0003735 ... N/A 26158507
    58 3jan:SS (3.75) BS01 rna N/A GO:0003676 ... N/A 26158507
    59 3jan:ST (3.75) BS01 rna N/A GO:0003735 ... N/A 26158507
    60 3jan:SU (3.75) BS01 rna N/A GO:0003723 ... N/A 26158507
    61 3jan:SW (3.75) BS01 rna N/A GO:0003735 ... N/A 26158507
    62 3jan:SX (3.75) BS01 rna N/A GO:0003735 ... N/A 26158507
    63 3jan:SY (3.75) BS01 rna N/A GO:0003735 ... N/A 26158507
    64 3jan:SZ (3.75) BS01 rna N/A N/A N/A 26158507
    65 3jan:Sa (3.75) BS01 rna N/A GO:0003735 ... N/A 26158507
    66 3jan:Sa (3.75) BS02 ZN N/A GO:0003735 ... N/A 26158507
    67 3jan:Sb (3.75) BS01 rna N/A GO:0003735 ... N/A 26158507
    68 3jan:Sc (3.75) BS01 rna N/A GO:0003735 ... N/A 26158507
    69 3jan:Sd (3.75) BS01 rna N/A GO:0003735 ... N/A 26158507
    70 3jan:Se (3.75) BS01 rna N/A GO:0003735 ... N/A 26158507
    71 3jan:Sf (3.75) BS01 rna N/A GO:0003735 ... N/A 26158507
    72 3jan:Sg (3.75) BS01 rna N/A GO:0043022 ... N/A 26158507
    73 3jan:T (3.75) BS01 rna N/A GO:0003735 ... N/A 26158507
    74 3jan:T (3.75) BS02 rna N/A GO:0003735 ... N/A 26158507
    75 3jan:U (3.75) BS01 rna N/A GO:0003735 ... N/A 26158507
    76 3jan:V (3.75) BS01 rna N/A GO:0003735 ... N/A 26158507
    77 3jan:W (3.75) BS01 rna N/A N/A N/A 26158507
    78 3jan:X (3.75) BS01 rna N/A GO:0003735 ... N/A 26158507
    79 3jan:X (3.75) BS02 rna N/A GO:0003735 ... N/A 26158507
    80 3jan:Y (3.75) BS01 rna N/A GO:0003723 ... N/A 26158507
    81 3jan:Y (3.75) BS02 rna N/A GO:0003723 ... N/A 26158507
    82 3jan:Z (3.75) BS01 rna N/A GO:0003735 ... N/A 26158507
    83 3jan:a (3.75) BS01 rna N/A GO:0003735 ... N/A 26158507
    84 3jan:b (3.75) BS01 rna N/A GO:0003735 ... N/A 26158507
    85 3jan:c (3.75) BS01 rna N/A GO:0003723 ... N/A 26158507
    86 3jan:d (3.75) BS01 rna N/A GO:0003735 ... N/A 26158507
    87 3jan:e (3.75) BS01 rna N/A GO:0003735 ... N/A 26158507
    88 3jan:f (3.75) BS01 rna N/A GO:0003735 ... N/A 26158507
    89 3jan:g (3.75) BS01 rna N/A GO:0003735 ... N/A 26158507
    90 3jan:h (3.75) BS01 rna N/A GO:0000463 ... N/A 26158507
    91 3jan:h (3.75) BS02 rna N/A GO:0000463 ... N/A 26158507
    92 3jan:i (3.75) BS01 rna N/A GO:0003735 ... N/A 26158507
    93 3jan:j (3.75) BS01 rna N/A GO:0003735 ... N/A 26158507
    94 3jan:j (3.75) BS02 rna N/A GO:0003735 ... N/A 26158507
    95 3jan:j (3.75) BS03 ZN N/A GO:0003735 ... N/A 26158507
    96 3jan:k (3.75) BS01 rna N/A GO:0003735 ... N/A 26158507
    97 3jan:l (3.75) BS01 rna N/A GO:0003735 ... N/A 26158507
    98 3jan:l (3.75) BS02 rna N/A GO:0003735 ... N/A 26158507
    99 3jan:m (3.75) BS01 rna N/A GO:0003735 ... N/A 26158507
    100 3jan:m (3.75) BS02 ZN N/A GO:0003735 ... N/A 26158507
    101 3jan:o (3.75) BS01 rna N/A GO:0003735 ... N/A 26158507
    102 3jan:o (3.75) BS02 rna N/A GO:0003735 ... N/A 26158507
    103 3jan:o (3.75) BS03 ZN N/A GO:0003735 ... N/A 26158507
    104 3jan:p (3.75) BS01 rna N/A GO:0003735 ... N/A 26158507
    105 3jan:q (3.75) BS01 rna N/A N/A N/A 26158507
    106 3jan:r (3.75) BS01 rna N/A GO:0003735 ... N/A 26158507
    107 3jan:z (3.75) BS01 rna N/A GO:0003924 ... N/A 26158507
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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