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BioLiP
Download all results in tab-seperated text for 116 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 3jai:A (3.65) BS01 rna ? GO:0002181 ... G1TT27 26245381
    2 3jai:AA (3.65) BS01 rna N/A GO:0003735 ... N/A 26245381
    3 3jai:B (3.65) BS01 rna ? GO:0003723 ... G1TL06 26245381
    4 3jai:BB (3.65) BS01 rna ? GO:0003735 ... G1SS70 26245381
    5 3jai:C (3.65) BS01 rna ? GO:0003735 ... G1SVW5 26245381
    6 3jai:C (3.65) BS02 rna ? GO:0003735 ... G1SVW5 26245381
    7 3jai:CC (3.65) BS01 rna N/A GO:0003723 ... N/A 26245381
    8 3jai:D (3.65) BS01 rna ? GO:0000027 ... P19949 26245381
    9 3jai:D (3.65) BS02 rna ? GO:0000027 ... P19949 26245381
    10 3jai:DD (3.65) BS01 rna 4.2.99.18 GO:0003677 ... G1TNM3 26245381
    11 3jai:E (3.65) BS01 rna ? GO:0003735 ... G1TG04 26245381
    12 3jai:EE (3.65) BS01 rna ? GO:0003723 ... G1TK17 26245381
    13 3jai:F (3.65) BS01 rna N/A GO:0000463 ... N/A 26245381
    14 3jai:F (3.65) BS02 rna N/A GO:0000463 ... N/A 26245381
    15 3jai:FF (3.65) BS01 rna ? GO:0000028 ... G1TFM5 26245381
    16 3jai:FF (3.65) BS02 rna ? GO:0000028 ... G1TFM5 26245381
    17 3jai:G (3.65) BS01 rna ? GO:0042254 ... G1STW0 26245381
    18 3jai:G (3.65) BS02 rna ? GO:0042254 ... G1STW0 26245381
    19 3jai:GG (3.65) BS01 rna ? GO:0000082 ... G1TM55 26245381
    20 3jai:H (3.65) BS01 rna ? GO:0002181 ... G1SWI6 26245381
    21 3jai:HH (3.65) BS01 rna ? GO:0003735 ... G1SVB0 26245381
    22 3jai:I (3.65) BS01 rna ? GO:0000027 ... B7NZQ2 26245381
    23 3jai:I (3.65) BS02 rna ? GO:0000027 ... B7NZQ2 26245381
    24 3jai:II (3.65) BS01 rna ? GO:0000462 ... G1TJW1 26245381
    25 3jai:II (3.65) BS02 rna ? GO:0000462 ... G1TJW1 26245381
    26 3jai:J (3.65) BS01 rna ? GO:0003723 ... G1TUB8 26245381
    27 3jai:J (3.65) BS02 rna ? GO:0003723 ... G1TUB8 26245381
    28 3jai:J (3.65) BS03 rna ? GO:0003723 ... G1TUB8 26245381
    29 3jai:JJ (3.65) BS01 rna ? GO:0003723 ... B7NZS8 26245381
    30 3jai:KK (3.65) BS01 rna ? N/A G1TPV3 26245381
    31 3jai:L (3.65) BS01 rna N/A GO:0003735 ... N/A 26245381
    32 3jai:L (3.65) BS02 rna N/A GO:0003735 ... N/A 26245381
    33 3jai:LL (3.65) BS01 rna ? GO:0003735 ... G1TRM4 26245381
    34 3jai:M (3.65) BS01 rna ? GO:0003723 ... G1SZ12 26245381
    35 3jai:MM (3.65) BS01 rna ? GO:0003735 ... G1SFR8 26245381
    36 3jai:N (3.65) BS01 rna ? GO:0002181 ... G1T0C1 26245381
    37 3jai:N (3.65) BS02 rna ? GO:0002181 ... G1T0C1 26245381
    38 3jai:NN (3.65) BS01 rna ? GO:0003735 ... G1SP51 26245381
    39 3jai:NN (3.65) BS02 rna ? GO:0003735 ... G1SP51 26245381
    40 3jai:O (3.65) BS01 rna N/A GO:0003735 ... N/A 26245381
    41 3jai:OO (3.65) BS01 rna ? GO:0000028 ... G1T1F0 26245381
    42 3jai:P (3.65) BS01 peptide N/A GO:0003735 ... N/A 26245381
    43 3jai:P (3.65) BS02 rna N/A GO:0003735 ... N/A 26245381
    44 3jai:P (3.65) BS03 rna N/A GO:0003735 ... N/A 26245381
    45 3jai:PP (3.65) BS01 rna ? GO:0003723 ... G1U0Q2 26245381
    46 3jai:Q (3.65) BS01 rna N/A GO:0003735 ... N/A 26245381
    47 3jai:QQ (3.65) BS01 rna ? GO:0000462 ... G1SGX4 26245381
    48 3jai:R (3.65) BS01 rna N/A GO:0003723 ... N/A 26245381
    49 3jai:R (3.65) BS02 rna N/A GO:0003723 ... N/A 26245381
    50 3jai:RR (3.65) BS01 rna ? GO:0003735 ... G1TU13 26245381
    51 3jai:S (3.65) BS01 rna N/A GO:0003735 ... N/A 26245381
    52 3jai:S (3.65) BS02 rna N/A GO:0003735 ... N/A 26245381
    53 3jai:SS (3.65) BS01 rna ? GO:0003676 ... G1TPG3 26245381
    54 3jai:T (3.65) BS01 rna ? GO:0003735 ... G1SHQ2 26245381
    55 3jai:T (3.65) BS02 rna ? GO:0003735 ... G1SHQ2 26245381
    56 3jai:TT (3.65) BS01 rna ? GO:0000028 ... G1TN62 26245381
    57 3jai:U (3.65) BS01 rna N/A GO:0003735 ... N/A 26245381
    58 3jai:UU (3.65) BS01 rna ? GO:0003723 ... G1SIZ2 26245381
    59 3jai:V (3.65) BS01 rna ? GO:0000122 ... G1T6D1 26245381
    60 3jai:W (3.65) BS01 rna N/A N/A N/A 26245381
    61 3jai:WW (3.65) BS01 rna ? GO:0003735 ... G1TG89 26245381
    62 3jai:X (3.65) BS01 rna ? GO:0003735 ... G1SE76 26245381
    63 3jai:X (3.65) BS02 rna ? GO:0003735 ... G1SE76 26245381
    64 3jai:XX (3.65) BS01 rna ? GO:0003735 ... G1SZ47 26245381
    65 3jai:Y (3.65) BS01 rna ? GO:0002181 ... G1SQH0 26245381
    66 3jai:Y (3.65) BS02 rna ? GO:0002181 ... G1SQH0 26245381
    67 3jai:YY (3.65) BS01 rna ? GO:0003735 ... G1T3D8 26245381
    68 3jai:Z (3.65) BS01 rna ? GO:0003735 ... G1TXF6 26245381
    69 3jai:ZZ (3.65) BS01 rna ? N/A G1TDB3 26245381
    70 3jai:a (3.65) BS01 rna ? GO:0003735 ... G1SNY0 26245381
    71 3jai:aa (3.65) BS01 rna N/A GO:0003735 ... N/A 26245381
    72 3jai:aa (3.65) BS02 ZN N/A GO:0003735 ... N/A 26245381
    73 3jai:b (3.65) BS01 rna ? GO:0003735 ... G1SGR6 26245381
    74 3jai:bb (3.65) BS01 rna ? GO:0000028 ... G1TZ76 26245381
    75 3jai:c (3.65) BS01 rna N/A GO:0003723 ... N/A 26245381
    76 3jai:cc (3.65) BS01 rna ? GO:0003735 ... G1TIB4 26245381
    77 3jai:d (3.65) BS01 rna ? GO:0003735 ... G1SHG0 26245381
    78 3jai:dd (3.65) BS01 rna ? GO:0003735 ... G1U7M4 26245381
    79 3jai:dd (3.65) BS02 ZN ? GO:0003735 ... G1U7M4 26245381
    80 3jai:e (3.65) BS01 rna ? GO:0003735 ... G1TUN8 26245381
    81 3jai:ee (3.65) BS01 rna ? GO:0003735 ... G1T8A2 26245381
    82 3jai:f (3.65) BS01 rna ? GO:0000049 ... G1SF08 26245381
    83 3jai:ff (3.65) BS01 rna ? GO:0003735 ... G1SK22 26245381
    84 3jai:ff (3.65) BS02 ZN ? GO:0003735 ... G1SK22 26245381
    85 3jai:g (3.65) BS01 rna ? GO:0003735 ... G1TXG5 26245381
    86 3jai:g (3.65) BS02 ZN ? GO:0003735 ... G1TXG5 26245381
    87 3jai:gg (3.65) BS01 rna ? GO:0001891 ... G1SJB4 26245381
    88 3jai:h (3.65) BS01 rna ? GO:0000463 ... G1SIT5 26245381
    89 3jai:h (3.65) BS02 rna ? GO:0000463 ... G1SIT5 26245381
    90 3jai:i (3.65) BS01 rna ? GO:0002181 ... G1TTQ5 26245381
    91 3jai:ii (3.65) BS01 rna ? GO:0000184 ... P62495 26245381
    92 3jai:ii (3.65) BS02 rna ? GO:0000184 ... P62495 26245381
    93 3jai:ii (3.65) BS03 rna ? GO:0000184 ... P62495 26245381
    94 3jai:ii (3.65) BS04 rna ? GO:0000184 ... P62495 26245381
    95 3jai:j (3.65) BS01 rna ? GO:0003735 ... U3KPD5 26245381
    96 3jai:j (3.65) BS02 rna ? GO:0003735 ... U3KPD5 26245381
    97 3jai:j (3.65) BS03 ZN ? GO:0003735 ... U3KPD5 26245381
    98 3jai:jj (3.65) BS01 rna ? GO:0000054 ... G1SG72 26245381
    99 3jai:jj (3.65) BS02 rna ? GO:0000054 ... G1SG72 26245381
    100 3jai:jj (3.65) BS03 SF4 ? GO:0000054 ... G1SG72 26245381
    101 3jai:jj (3.65) BS04 SF4 ? GO:0000054 ... G1SG72 26245381
    102 3jai:jj (3.65) BS05 ADP ? GO:0000054 ... G1SG72 26245381
    103 3jai:jj (3.65) BS06 ADP ? GO:0000054 ... G1SG72 26245381
    104 3jai:k (3.65) BS01 rna N/A GO:0003735 ... N/A 26245381
    105 3jai:l (3.65) BS01 rna ? GO:0003735 ... G1SYU7 26245381
    106 3jai:l (3.65) BS02 rna ? GO:0003735 ... G1SYU7 26245381
    107 3jai:m (3.65) BS01 rna N/A GO:0003735 ... N/A 26245381
    108 3jai:m (3.65) BS02 ZN N/A GO:0003735 ... N/A 26245381
    109 3jai:o (3.65) BS01 rna ? GO:0003735 ... G1T040 26245381
    110 3jai:o (3.65) BS02 rna ? GO:0003735 ... G1T040 26245381
    111 3jai:o (3.65) BS03 ZN ? GO:0003735 ... G1T040 26245381
    112 3jai:p (3.65) BS01 rna ? GO:0003735 ... G1SY53 26245381
    113 3jai:p (3.65) BS02 ZN ? GO:0003735 ... G1SY53 26245381
    114 3jai:r (3.65) BS01 rna ? GO:0003735 ... G1U7L1 26245381
    115 3jai:s (3.65) BS01 rna N/A N/A N/A 26245381
    116 3jai:t (3.65) BS01 rna ? GO:0003723 ... G1SMR7 26245381
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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