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BioLiP
Download all results in tab-seperated text for 70 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 3j92:0 (3.6) BS01 rna 2.3.2.27 GO:0004842 ... O94822 25578875
    2 3j92:A (3.6) BS01 rna N/A GO:0003723 ... N/A 25578875
    3 3j92:B (3.6) BS01 rna N/A GO:0003735 ... N/A 25578875
    4 3j92:C (3.6) BS01 rna N/A GO:0003735 ... N/A 25578875
    5 3j92:C (3.6) BS02 rna N/A GO:0003735 ... N/A 25578875
    6 3j92:D (3.6) BS01 rna N/A GO:0003735 ... N/A 25578875
    7 3j92:D (3.6) BS02 rna N/A GO:0003735 ... N/A 25578875
    8 3j92:E (3.6) BS01 rna N/A GO:0003735 ... N/A 25578875
    9 3j92:F (3.6) BS01 rna N/A GO:0000463 ... N/A 25578875
    10 3j92:F (3.6) BS02 rna N/A GO:0000463 ... N/A 25578875
    11 3j92:G (3.6) BS01 rna N/A GO:0042254 ... N/A 25578875
    12 3j92:G (3.6) BS02 rna N/A GO:0042254 ... N/A 25578875
    13 3j92:H (3.6) BS01 rna N/A GO:0003735 ... N/A 25578875
    14 3j92:I (3.6) BS01 rna N/A GO:0003735 ... N/A 25578875
    15 3j92:I (3.6) BS02 rna N/A GO:0003735 ... N/A 25578875
    16 3j92:I (3.6) BS03 rna N/A GO:0003735 ... N/A 25578875
    17 3j92:J (3.6) BS01 rna N/A GO:0003735 ... N/A 25578875
    18 3j92:J (3.6) BS02 rna N/A GO:0003735 ... N/A 25578875
    19 3j92:L (3.6) BS01 rna N/A GO:0003735 ... N/A 25578875
    20 3j92:L (3.6) BS02 rna N/A GO:0003735 ... N/A 25578875
    21 3j92:M (3.6) BS01 rna N/A GO:0003723 ... N/A 25578875
    22 3j92:N (3.6) BS01 rna N/A GO:0003735 ... N/A 25578875
    23 3j92:N (3.6) BS02 rna N/A GO:0003735 ... N/A 25578875
    24 3j92:O (3.6) BS01 rna N/A GO:0003735 ... N/A 25578875
    25 3j92:P (3.6) BS01 rna N/A GO:0003735 ... N/A 25578875
    26 3j92:P (3.6) BS02 rna N/A GO:0003735 ... N/A 25578875
    27 3j92:Q (3.6) BS01 rna N/A GO:0003735 ... N/A 25578875
    28 3j92:R (3.6) BS01 rna N/A GO:0003723 ... N/A 25578875
    29 3j92:S (3.6) BS01 rna N/A GO:0003735 ... N/A 25578875
    30 3j92:S (3.6) BS02 rna N/A GO:0003735 ... N/A 25578875
    31 3j92:T (3.6) BS01 rna N/A GO:0003735 ... N/A 25578875
    32 3j92:T (3.6) BS02 rna N/A GO:0003735 ... N/A 25578875
    33 3j92:U (3.6) BS01 rna N/A GO:0003735 ... N/A 25578875
    34 3j92:V (3.6) BS01 rna N/A GO:0003735 ... N/A 25578875
    35 3j92:W (3.6) BS01 rna N/A N/A N/A 25578875
    36 3j92:X (3.6) BS01 rna N/A GO:0003735 ... N/A 25578875
    37 3j92:X (3.6) BS02 rna N/A GO:0003735 ... N/A 25578875
    38 3j92:Y (3.6) BS01 rna N/A GO:0003723 ... N/A 25578875
    39 3j92:Y (3.6) BS02 rna N/A GO:0003723 ... N/A 25578875
    40 3j92:Z (3.6) BS01 rna N/A GO:0003735 ... N/A 25578875
    41 3j92:a (3.6) BS01 rna N/A GO:0003735 ... N/A 25578875
    42 3j92:b (3.6) BS01 rna N/A GO:0003735 ... N/A 25578875
    43 3j92:c (3.6) BS01 rna N/A GO:0003723 ... N/A 25578875
    44 3j92:d (3.6) BS01 rna N/A GO:0003735 ... N/A 25578875
    45 3j92:e (3.6) BS01 rna N/A GO:0003735 ... N/A 25578875
    46 3j92:f (3.6) BS01 rna N/A GO:0003735 ... N/A 25578875
    47 3j92:g (3.6) BS01 rna N/A GO:0003735 ... N/A 25578875
    48 3j92:g (3.6) BS02 ZN N/A GO:0003735 ... N/A 25578875
    49 3j92:h (3.6) BS01 rna N/A GO:0000463 ... N/A 25578875
    50 3j92:h (3.6) BS02 rna N/A GO:0000463 ... N/A 25578875
    51 3j92:i (3.6) BS01 rna N/A GO:0003735 ... N/A 25578875
    52 3j92:j (3.6) BS01 rna N/A GO:0003735 ... N/A 25578875
    53 3j92:j (3.6) BS02 rna N/A GO:0003735 ... N/A 25578875
    54 3j92:j (3.6) BS03 ZN N/A GO:0003735 ... N/A 25578875
    55 3j92:k (3.6) BS01 rna N/A GO:0003735 ... N/A 25578875
    56 3j92:l (3.6) BS01 rna N/A GO:0003735 ... N/A 25578875
    57 3j92:l (3.6) BS02 rna N/A GO:0003735 ... N/A 25578875
    58 3j92:m (3.6) BS01 rna N/A GO:0003735 ... N/A 25578875
    59 3j92:m (3.6) BS02 ZN N/A GO:0003735 ... N/A 25578875
    60 3j92:o (3.6) BS01 rna N/A GO:0003735 ... N/A 25578875
    61 3j92:o (3.6) BS02 ZN N/A GO:0003735 ... N/A 25578875
    62 3j92:p (3.6) BS01 rna N/A GO:0003735 ... N/A 25578875
    63 3j92:p (3.6) BS02 ZN N/A GO:0003735 ... N/A 25578875
    64 3j92:r (3.6) BS01 rna N/A GO:0003735 ... N/A 25578875
    65 3j92:s (3.6) BS01 rna N/A GO:0042254 ... N/A 25578875
    66 3j92:t (3.6) BS01 rna N/A GO:0003735 ... N/A 25578875
    67 3j92:u (3.6) BS01 rna ? N/A O60524 25578875
    68 3j92:v (3.6) BS01 peptide ? N/A O60524 25578875
    69 3j92:v (3.6) BS02 rna ? N/A O60524 25578875
    70 3j92:z (3.6) BS01 rna 2.3.2.27 GO:0004842 ... O94822 25578875
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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